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J

John M. Koomen

h. lee moffitt cancer center and research institute

62H-index
787Paper Count
1.4WCitation Count
Published Papers 212
Publication Date
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Late-stage functionalization with strain-release warheads enables tunable covalent inhibition
errScience
IF45.8
err2026-07-23
err0
PREAI
errZachary P. Shultz; Ansar Lee-Sam; Yun-Pu Chang; Luxin Sun; Dylan Grassie; Alessio Gabellini; Kyle Pedretty; Thomas Scattolin; Victoria Izumi; Bin Fang; Samer Sansil; Ramu Kakumanu; Lukasz Wojtas; John Koomen; Ernst Schönbrunn; Andrii Monastyrskyi; Derek Duckett; Justin M. Lopchuk
errShare
errSave
Cancer-associated fibroblasts confer ALK inhibitor resistance in EML4-ALK-driven lung cancer by concurrent integrin and MET signaling
errSCIENCE SIGNALING
IF6.6
err2025-12-23
err0
PREAI
errHu, Qianqian; Remsing Rix, Lily L.; Desai, Bina; Miroshnychenko, Daria; Li, Xueli; Welsh, Eric A.; Fang, Bin; Wright, Gabriela M.; Chaudhary, Neelkamal; Kroeger, Jodi L.; Doebele, Robert C.; Koomen, John M.; Haura, Eric B.; Marusyk, Andriy; Rix, Uwe
errShare
errSave
Race-based differences in serum biomarkers for cancer-associated cachexia in a diverse cohort of patients with pancreatic ductal adenocarcinoma
errCommunications Medicine
IF6.3
err2025-12-18
err0
errOAAI
errMargaret A. Park; Evan W. Davis; Solomon Alhassan; J. Pablo Arnoletti; Toni L. Basinski; Ashley B. McKee; Mark Bloomston; Tiffany L. Carson; Tiago Biachi de Castria; Dung-Tsa Chen; Elena M. Cortizas; Sylvia L. Crowder; Maria Genilo Delgado; Wade G. Douglas; Jason B. Fleming; Pamela Hodul; Kevin L. Huguet; Kun Jiang; Dae Won Kim; John Koomen; Anjuli K. Luthra; Mokenge Malafa; Anjana A. Menon; Raiza Morales; Nipun B. Merchant; Kenneth Meredith; Qianxing Mo; Manual A. Molina-Vega; Lina Moreno-Urazan; Kayode D. Olumoyin; Nathan Parker; Jose M. Pimiento; Ghulam Rasool; Katarzyna A. Rejniak; Samer Sansil; Lauren M. Sparks; Paul Stewart; Alexandra F. Tassielli; Jamie K. Teer; Dan Viet Tran; Jose G. Trevino; Vic Velanovich; Christopher J. Whelan; Daniel Jeong; Sarah M. Judge; Andrew R. Judge; Jennifer B. Permuth
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errSave
Quantitative Proteomics of Nitrosylated Proteins in Melanoma Using the Biotin-Switch Technique Combined With Tandem Mass Tag Labeling
errBIO-PROTOCOL
IF1.1
err2025-12-05
err0
PREAI
errYadav, Vipin K.; Fang, Bin; Koomen, John M.; Srivastava, Jyoti; Premi, Sanjay
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errSave
Dual targeting of RET and SRC synergizes in RET fusion-positive cancer cells
errMolecular Oncology
IF4.5
err2025-11-05
err0
errOAAI
errJuhyeon Son; Lily L. Remsing Rix; Bin Fang; Eric A. Welsh; Nicole V. Bremer; Valentina Foglizzo; Paola Roa; Nickole Sigcha-Coello; Yi Liao; Eric B. Haura; Alexander Drilon; John M. Koomen; Emiliano Cocco; Uwe Rix
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errSave
A machine learning framework for classifying lipids in untargeted metabolomics using mass-to-charge ratios and retention times
errMetabolomics
IF3.3
err2025-10-18
err0
errOAAI
errChristelle Colin-Leitzinger; Yonatan Ayalew Mekonnen; Isis Narvaez-Bandera; Vanessa Y. Rubio; Dalia Ercan; Eric A. Welsh; Lancia N. F. Darville; Min Liu; Hayley D. Ackerman; Julian Avila-Pacheco; Clary B. Clish; Kevin Hicks; John M. Koomen; Nancy Gillis; Brooke L. Fridley; Elsa R. Flores; Oana A. Zeleznik; Paul A. Stewart
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errSave
A PAN-CANCER ATLAS OF LEPTOMENINGEAL DISEASE REVEALS BRANCHED CHAIN KETO ACIDS DRIVE IMMUNOSUPPRESSION AND NEURODEGENERATION
errNEURO-ONCOLOGY
IF13.4
err2025-10-01
err0
errOAAI
errKhaled, M.; Vallebuona, E.; Ren, Y.; Law, V; Boozo, M.; Chen, Z.; Evernden, B.; Ospina, O.; Liu, M.; Hall, M.; Darville, L.; Izumi, V; Pilon-Thomas, S.; Koomen, J.; Jain, M.; Gomes, A.; Kundalia, R.; Wallace, G.; Chen, A.; Stewart, P.; Corallo, S.; Holmen, S.; Locke, F.; Forsyth, P.; Smalley, I
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errSave
Evaluation of Proteinuria in Plasma Cell Disorders: Shortcomings of Measurements Based on 24-Hour Collections and Alternative Approaches
errJOURNAL OF APPLIED LABORATORY MEDICINE
IF1.9
err2025-09-01
err0
PREAI
errHortin, Glen L.; Koomen, John M.
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errSave
Ribosomal expansion segment contributes to translation fidelity via N-terminal processing of ribosomal proteins
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-05-28
err0
errOAAI
errNagai, Riku; Milam, Olivia L.; Niwa, Tatsuya; Howell, William J.; Best, Jacob A.; Yoshida, Hideji; Freeburg, Carver D.; Koomen, John M.; Fujii, Kotaro
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errSave
Impaired T cell and neoantigen retention in time-serial analysis of metastatic non-small cell lung cancer in patients unresponsive to TIL cell therapy
errNATURE CANCER
IF28.5
err2025-05-08
err0
PREAI
errWang, Chao; Yu, Xiaoqing; Teer, Jamie K.; Yao, Jiqiang; Du, Dongliang; Liu, Xiaoxian; Thompson, Zachary J.; Wang, Min Hsuan; Welsh, Eric A.; Memon, Danish; Chan, Timothy A.; Makarov, Vladimir; Anadon, Carmen M.; Saeed, Lamees; Boyle, Theresa A.; Fang, Bin; Koomen, John M.; Cox, Cheryl; Landin, Ana M.; Yoder, Sean J.; Kim, Sungjune; Chen, Dung-Tsa; Pilon-Thomas, Shari A.; Conejo-Garcia, Jose R.; Antonia, Scott J.; Haura, Eric B.; Creelan, Benjamin C.
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errSave
Upregulation of p27 and its inhibition of CDK2/cyclin E activity following DNA damage by a novel platinum agent are dependent on the expression of p21
errBRITISH JOURNAL OF CANCER
IF6.8
err2025-04-29
err0
PREAI
errHe, G.; Kuang, J.; Huang, Z.; Koomen, J.; Kobayashi, R.; Khokhar, A. R.; Siddik, Z. H.
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errSave
Unveiling the Molecular Features of SCLC With a Clinical RNA Expression Panel
errJTO CLINICAL AND RESEARCH REPORTS
IF3.5
err2024-11-01
err0
errOAAI
errOzakinci, Hilal; Alontaga, Aileen Y.; Cano, Pedro; Koomen, John M.; Perez, Bradford A.; Beg, Amer A.; Chiappori, Alberto A.; Haura, Eric B.; Boyle, Theresa A.
errShare
errSave
Targeting NOS sensitizes the NRAS-mutant melanomas to MEK inhibition and induces Immunogenic Cell Death
errEUROPEAN JOURNAL OF CANCER
IF7.1
err2024-10-01
err0
PREAI
errSrivastava, J.; Yadav, V.; Jimenez, R.; Pulido, A. De Mingo; Fang, B.; Koomen, J.; Tsai, K.; Smalley, K.; Rodriguez, P.; Premi, S.
errShare
errSave
Elucidating treatment induced tumor antigen presentation in pancreatic cancer
errCANCER RESEARCH
IF16.6
err2024-09-15
err0
PREAI
errAdhikari, Emma; Weeden, Andrew; Brennan, Emily; Polera, Christopher; Lzumi, Victoria; Fang, Bin; Koomen, John; Stewart, Paul; Jaeger, Alex
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errSave
Efferocytosis drives a tryptophan metabolism pathway in macrophages to promote tissue resolution
errNATURE METABOLISM
IF20.8
err2024-09-06
err0
PREAI
errSukka, Santosh R.; Ampomah, Patrick B.; Darville, Lancia N. F.; Ngai, David; Wang, Xiaobo; Kuriakose, George; Xiao, Yuling; Shi, Jinjun; Koomen, John M.; Mccusker, Robert H.; Tabas, Ira
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errSave
A semi-automated workflow for DIA-based global discovery to pathway-driven PRM analysis
errPROTEOMICS
IF3.9
err2024-09-05
err0
PREAI
errGuergues, Jennifer; Wohlfahrt, Jessica; Koomen, John M.; Krieger, Jonathan R.; Varma, Sameer; Stevens, Jr Stanley M.
errShare
errSave
Mapping the cancer surface proteome in search of target antigens for immunotherapy
errMOLECULAR THERAPY
IF12
err2024-09-01
err1
PREAI
errDi Meo, Francesco; Kale, Brandon; Koomen, John M.; Perna, Fabiana
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errSave
Implementation of a High-Accuracy Targeted Gene Expression Panel for Clinical Care
errJOURNAL OF MOLECULAR DIAGNOSTICS
IF3.4
err2024-08-01
err2
PREAI
errAlontaga, Aileen Y.; Cano, Pedro; Ozakinci, Hilal; Puskas, John A.; Stewart, Paul A.; Welsh, Eric A.; Yoder, Sean J.; Hicks, J. Kevin; Saltos, Andreas N.; Bossler, Aaron D.; Haura, Eric B.; Koomen, John M.; Boyle, Theresa A.
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errSave
SHP2 as a primordial epigenetic enzyme expunges histone H3 pTyr-54 to amend androgen receptor homeostasis
errNATURE COMMUNICATIONS
IF15.7
err2024-07-04
err4
errOAAI
errChouhan, Surbhi; Sridaran, Dhivya; Weimholt, Cody; Luo, Jingqin; Li, Tiandao; Hodgson, Myles C.; Santos, Luana N.; Le Sommer, Samantha; Fang, Bin; Koomen, John M.; Seeliger, Markus; Qu, Cheng-Kui; Yart, Armelle; Kontaridis, Maria I.; Mahajan, Kiran; Mahajan, Nupam P.
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errSave
Pathogenic Roles for RNASET2 in Clear Cell Renal Cell Carcinoma
errLABORATORY INVESTIGATION
IF4.2
err2024-05-01
err1
PREAI
errPeak, Taylor; Tian, Yijun; Patel, Aman; Shaw, Tim; Obermayer, Alyssa; Laborde, Jose; Kim, Youngchul; Johnson, Joseph; Stewart, Paul; Fang, Bin; Teer, Jamie K.; Koomen, John; Berglund, Anders; Marchion, Doug; Francis, Natasha; Echevarria, Paola Ramos; Dhillon, Jasreman; Clark, Noel; Chang, Andrew; Sexton, Wade; Zemp, Logan; Chahoud, Jad; Wang, Liang; Manley, Brandon
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Keith T. Flaherty
H-index: 146 · Papers: 1.7K
J
John M. Kirkwood
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A
Alan R. Tall
H-index: 132 · Papers: 472
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