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Alexei J. Drummond

University of Auckland

72H-index
221Paper Count
10.4WCitation Count
Published Papers 70
Publication Date
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BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
err2025-07-07
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errOAAI
errGuy Baele; Xiang Ji; Gabriel W. Hassler; John T. McCrone; Yucai Shao; Zhenyu Zhang; Andrew J. Holbrook; Philippe Lemey; Alexei J. Drummond; Andrew Rambaut; Marc A. Suchard
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Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities
err2025-02-13
err1
errOAAI
errBerling, Lars; Klawitter, Jonathan; Bouckaert, Remco; Xie, Dong; Gavryushkin, Alex; Drummond, Alexei J.
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How to Validate a Bayesian Evolutionary Model
err2024-11-07
err1
errOAAI
errMendes, Fabio K.; Bouckaert, Remco; Carvalho, Luiz M.; Drummond, Alexei J.
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Fast Bayesian Inference of Phylogenies from Multiple Continuous Characters
err2023-12-12
err6
errOAAI
errZhang, Rong; Drummond, Alexei J.; Mendes, Fabio K.
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Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia
err2023-07-13
err11
errOAAI
errJimenez-Silva, Cinthy; Rivero, Ricardo; Douglas, Jordan; Bouckaert, Remco; Villabona-Arenas, Ch. Julian; Atkins, Katherine E.; Gastelbondo, Bertha; Calderon, Alfonso; Guzman, Camilo; Echeverri-De la Hoz, Daniel; Munoz, Marina; Ballesteros, Nathalia; Castaneda, Sergio; Patino, Luz H.; Ramirez, Angie; Luna, Nicolas; Paniz-Mondolfi, Alberto; Serrano-Coll, Hector; Ramirez, Juan David; Mattar, Salim; Drummond, Alexei J.
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Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution
err2022-06-23
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errChen, Kylie; Moravec, Jiri C.; Gavryushkin, Alex; Welch, David; Drummond, Alexei J.
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Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales
err2021-07-06
err10
errOAAI
errOgilvie, Huw A.; Mendes, Fabio K.; Vaughan, Timothy G.; Matzke, Nicholas J.; Stadler, Tanja; Welch, David; Drummond, Alexei J.
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Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations
err2021-06-08
err24
errOAAI
errDouglas, Jordan; Mendes, Fabio K.; Bouckaert, Remco; Xie, Dong; Jimenez-Silva, Cinthy L.; Swanepoel, Christiaan; de Ligt, Joep; Ren, Xiaoyun; Storey, Matt; Hadfield, James; Simpson, Colin R.; Geoghegan, Jemma L.; Drummond, Alexei J.; Welch, David
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Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand
err2021-05-01
err25
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errGeoghegan, Jemma L.; Douglas, Jordan; Ren, Xiaoyun; Storey, Matthew; Hadfield, James; Silander, Olin K.; Freed, Nikki E.; Jelley, Lauren; Jefferies, Sarah; Sherwood, Jillian; Paine, Shevaun; Huang, Sue; Sporle, Andrew; Baker, Michael G.; Murdoch, David R.; Drummond, Alexei J.; Welch, David; Simpson, Colin R.; French, Nigel; Holmes, Edward C.; de Ligt, Joep
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Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene
err2021-03-27
err0
errOAAI
errDouglas, Jordan; Drummond, Alexei J.; Kingston, Richard L.
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Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing
err2021-03-01
err52
errOAAI
errSwadi, Tara; Geoghegan, Jemma L.; Devine, Tom; McElnay, Caroline; Sherwood, Jillian; Shoemack, Phil; Ren, Xiaoyun; Storey, Matt; Jefferies, Sarah; Smit, Erasmus; Hadfield, James; Kenny, Aoife; Jelley, Lauren; Sporle, Andrew; McNeill, Andrea; Reynolds, G. Edwin; Mouldey, Kip; Lowe, Lindsay; Sonder, Gerard; Drummond, Alexei J.; Huang, Sue; Welch, David; Holmes, Edward C.; French, Nigel; Simpson, Colin R.; de Ligt, Joep
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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
err2020-12-11
err82
errOAAI
errGeoghegan, Jemma L.; Ren, Xiaoyun; Storey, Matthew; Hadfield, James; Jelley, Lauren; Jefferies, Sarah; Sherwood, Jill; Paine, Shevaun; Huang, Sue; Douglas, Jordan; Mendes, Fabio K.; Sporle, Andrew; Baker, Michael G.; Murdoch, David R.; French, Nigel; Simpson, Colin R.; Welch, David; Drummond, Alexei J.; Holmes, Edward C.; Duchene, Sebastian; de Ligt, Joep
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Estimating Epidemic Incidence and Prevalence from Genomic Data
err2019-05-06
err30
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errVaughan, Timothy G.; Leventhal, Gabriel E.; Rasmussen, David A.; Drummond, Alexei J.; Welch, David; Stadler, Tanja
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Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data
err2019-04-08
err39
errOAAI
errDopheide, Andrew; Tooman, Leah K.; Grosser, Stefanie; Agabiti, Barbara; Rhode, Birgit; Xie, Dong; Stevens, Mark I.; Nelson, Nicola; Buckley, Thomas R.; Drummond, Alexei J.; Newcomb, Richard D.
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SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination
err2019-03-08
err22
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errJariani, Abbas; Warth, Christopher; Deforche, Koen; Libin, Pieter; Drummond, Alexei J.; Rambaut, Andrew; Matsen, Frederick A.; Theys, Kristof
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Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity
err2018-09-27
err64
errOAAI
errDopheide, Andrew; Xie, Dong; Buckley, Thomas R.; Drummond, Alexei J.; Newcomb, Richard D.
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Phylodynamic Model Adequacy Using Posterior Predictive Simulations
err2018-06-25
err24
errOAAI
errDuchene, Sebastian; Bouckaert, Remco; Duchene, David A.; Stadler, Tanja; Drummond, Alexei J.
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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
err2018-06-08
err2.6K
errOAAI
errSuchard, Marc A.; Lemey, Philippe; Baele, Guy; Ayres, Daniel L.; Drummond, Alexei J.; Rambaut, Andrew
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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
err2018-04-27
err7.7K
errOAAI
errRambaut, Andrew; Drummond, Alexei J.; Xie, Dong; Baele, Guy; Suchard, Marc A.
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