Chen-Shan Chin

genedx holdings corp

H指数:52

被引数:2.7万

个人简介

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教育背景

暂无内容

工作经历

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荣誉奖项

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Author Correction: Complex genetic variation in nearly complete human genomes

作者更正：近完整人类基因组中的复杂遗传变异

Nature

IF48.5

2025-08-260

OAAI

Glennis A. Logsdon; Peter Ebert; Peter A. Audano; Mark Loftus; David Porubsky; Jana Ebler; Feyza Yilmaz; Pille Hallast; Timofey Prodanov; DongAhn Yoo; Carolyn A. Paisie; William T. Harvey; Xuefang Zhao; Gianni V. Martino; Mir Henglin; Katherine M. Munson; Keon Rabbani; Chen-Shan Chin; Bida Gu; Hufsah Ashraf; Stephan Scholz; Olanrewaju Austine-Orimoloye; Parithi Balachandran; Marc Jan Bonder; Haoyu Cheng; Zechen Chong; Jonathan Crabtree; Mark Gerstein; Lisbeth A. Guethlein; Patrick Hasenfeld; Glenn Hickey; Kendra Hoekzema; Sarah E. Hunt; Matthew Jensen; Yunzhe Jiang; Sergey Koren; Youngjun Kwon; Chong Li; Heng Li; Jiaqi Li; Paul J. Norman; Keisuke K. Oshima; Benedict Paten; Adam M. Phillippy; Nicholas R. Pollock; Tobias Rausch; Mikko Rautiainen; Yuwei Song; Arda Söylev; Arvis Sulovari; Likhitha Surapaneni; Vasiliki Tsapalou; Weichen Zhou; Ying Zhou; Qihui Zhu; Michael C. Zody; Ryan E. Mills; Scott E. Devine; Xinghua Shi; Michael E. Talkowski; Mark J. P. Chaisson; Alexander T. Dilthey; Miriam K. Konkel; Jan O. Korbel; Charles Lee; Christine R. Beck; Evan E. Eichler; Tobias Marschall

Complex genetic variation in nearly complete human genomes

几乎完整的人类基因组中的复杂遗传变异

Nature

IF48.5

2025-07-230

Recurrent evolution and selection shape structural diversity at the amylase locus

淀粉酶位点的反复进化和选择形状结构多样性

Nature

IF48.5

2024-09-040

OAAI

Genomic variant benchmark: if you cannot measure it, you cannot improve it

GENOME BIOLOGY

IF9.4

2023-10-058

OAAI

Long-read whole-genome analysis of human single cells

NATURE COMMUNICATIONS

IF15.7

2023-08-2412

OAAI

The complete sequence of a human Y chromosome

人类Y染色体的完整序列

Nature

IF48.5

2023-08-230

PRE

Arang Rhie; Sergey Nurk; Monika Cechova; Savannah J. Hoyt; Dylan J. Taylor; Nicolas Altemose; Paul W. Hook; Sergey Koren; Mikko Rautiainen; Ivan A. Alexandrov; Jamie Allen; Mobin Asri; Andrey V. Bzikadze; Nae-Chyun Chen; Chen-Shan Chin; Mark Diekhans; Paul Flicek; Giulio Formenti; Arkarachai Fungtammasan; Carlos Garcia Giron; Erik Garrison; Ariel Gershman; Jennifer L. Gerton; Patrick G. S. Grady; Andrea Guarracino; Leanne Haggerty; Reza Halabian; Nancy F. Hansen; Robert Harris; Gabrielle A. Hartley; William T. Harvey; Marina Haukness; Jakob Heinz; Thibaut Hourlier; Robert M. Hubley; Sarah E. Hunt; Stephen Hwang; Miten Jain; Rupesh K. Kesharwani; Alexandra P. Lewis; Heng Li; Glennis A. Logsdon; Julian K. Lucas; Wojciech Makalowski; Christopher Markovic; Fergal J. Martin; Ann M. Mc Cartney; Rajiv C. McCoy; Jennifer McDaniel; Brandy M. McNulty; Paul Medvedev; Alla Mikheenko; Katherine M. Munson; Terence D. Murphy; Hugh E. Olsen; Nathan D. Olson; Luis F. Paulin; David Porubsky; Tamara Potapova; Fedor Ryabov; Steven L. Salzberg; Michael E. G. Sauria; Fritz J. Sedlazeck; Kishwar Shafin; Valery A. Shepelev; Alaina Shumate; Jessica M. Storer; Likhitha Surapaneni; Angela M. Taravella Oill; Françoise Thibaud-Nissen; Winston Timp; Marta Tomaszkiewicz; Mitchell R. Vollger; Brian P. Walenz; Allison C. Watwood; Matthias H. Weissensteiner; Aaron M. Wenger; Melissa A. Wilson; Samantha Zarate; Yiming Zhu; Justin M. Zook; Evan E. Eichler; Rachel J. O’Neill; Michael C. Schatz; Karen H. Miga; Kateryna D. Makova; Adam M. Phillippy

Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes

NATURE METHODS

IF32.1

2023-06-2611

OAAI

Benchmarking challenging small variants with linked and long reads

具有链接和长读取的具有挑战性的小变体的基准测试

CELL GENOMICS

IF9

2022-05-0151

OAAI

Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; Khan, Ziad; Farek, Jesse; Mahmoud, Medhat; Stankovic, Ana; Kovacevic, Vladimir; Yoo, Byunggil; Miller, Neil; Rosenfeld, Jeffrey A.; Ni, Bohan; Zarate, Samantha; Kirsche, Melanie; Aganezov, Sergey; Schatz, Michael C.; Narzisi, Giuseppe; Byrska-Bishop, Marta; Clarke, Wayne; Evani, Uday S.; Markello, Charles; Shafin, Kishwar; Zhou, Xin; Sidow, Arend; Bansal, Vikas; Ebert, Peter; Marschall, Tobias; Lansdorp, Peter; Hanlon, Vincent; Mattsson, Carl-Adam; Barrio, Alvaro Martinez; Fiddes, Ian T.; Xiao, Chunlin; Fungtammasan, Arkarachai; Chin, Chen-Shan; Wenger, Aaron M.; Rowell, William J.; Sedlazeck, Fritz J.; Carroll, Andrew; Salit, Marc; Zook, Justin M.

Curated variation benchmarks for challenging medically relevant autosomal genes

具有挑战性的医学相关常染色体基因的策划变异基准

NATURE BIOTECHNOLOGY

IF41.7

2022-02-0776

OAAI

Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; McDaniel, Jennifer; Cheng, Haoyu; Fungtammasan, Arkarachai; Hwang, Yih-Chii; Gupta, Richa; Wenger, Aaron M.; Rowell, William J.; Khan, Ziad M.; Farek, Jesse; Zhu, Yiming; Pisupati, Aishwarya; Mahmoud, Medhat; Xiao, Chunlin; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Miller, Danny E.; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Narzisi, Giuseppe; Evani, Uday Shanker; Clarke, Wayne E.; Lee, Joyce; Mason, Christopher E.; Lincoln, Stephen E.; Miga, Karen H.; Ebbert, Mark T. W.; Shumate, Alaina; Li, Heng; Chin, Chen-Shan; Zook, Justin M.; Sedlazeck, Fritz J.

The complete sequence of a human genome

人类基因组的完整序列

Science

IF45.8

2022-01-010

OAAI

Sergey Nurk; Sergey Koren; Arang Rhie; Mikko Rautiainen; Andrey V. Bzikadze; Alla Mikheenko; Mitchell Robert Vollger; Nicolas Altemose; Lev I. Uralsky; Ariel Gershman; Sergey S. Aganezov; Savannah J. Hoyt; Mark Diekhans; Glennis A. Logsdon; Michael Alonge; Stylianos E. Antonarakis; Matthew Borchers; Gerard G. Bouffard; Shelise Y. Brooks; Gina Viviana Caldas; Nae-Chyun Chen; Haoyu Cheng; Chen-Shan Chin; William Chow; Leonardo Gomes de Lima; Philip C. Dishuck; Richard Michael Durbin; Tatiana Dvorkina; Ian T. Fiddes; Giulio Formenti; Robert S. Fulton; Arkarachai Fungtammasan; Erik P. Garrison; Patrick G. S. Grady; Tina A. Graves-Lindsay; Ira M. Hall; Nancy Fisher Hansen; Gabrielle A. Hartley; Marina Haukness; Kerstin Howe; Michael W. Hunkapiller; Chirag Jain; Miten Jain; Erich David Jarvis; Peter Kerpedjiev; Melanie Kirsche; Mikhail Kolmogorov; Jonas Korlach; Milinn Kremitzki; Heng Li; Valerie V. Braden Maduro; Tobias Marschall; Ann M. Mc Cartney; Jennifer McDaniel; Danny E. Miller; James C. Mullikin; Eugene Wimberly Myers; Nathan D. Olson; Benedict Paten; Paul S. Peluso; Pavel A. Pevzner; David Porubskỳ; Tamara Potapova; Evgeny Ivanovich Rogaev; Jeffrey Rosenfeld; Steven L. Salzberg; Valérie Schneider; Fritz Joachim Sedlazeck; Kishwar Shafin; Colin J. Shew; Alaina Shumate; Ying Sims; Arian F. A. Smit; Daniela C. Soto; Ivan Sović; Jessica M. Storer; Aaron Streets; Beth A. Sullivan; Françoise Thibaud‐Nissen; James Torrance; Justin Wagner; Brian P. Walenz; Aaron M. Wenger; Jonathan M. D. Wood; Chunlin Xiao; Stephanie M. Yan; Alice Young; Samantha Zarate; Urvashi Surti; Rajiv C. McCoy; Megan Y. Dennis; Ivan A. Alexandrov; Jennifer L. Gerton; Rachel J. Waugh O'Neill; Winston Timp; Justin M. Zook; Michael C. Schatz; Evan E. Eichler; Karen H. Miga; Adam M. Phillippy

Dynamic prediction of renal survival among deeply phenotyped kidney transplant recipients using artificial intelligence: an observational, international, multicohort study

LANCET DIGITAL HEALTH

IF24.1

2021-12-0136

OAAI

Raynaud, Marc; Aubert, Olivier; Divard, Gillian; Reese, Peter P.; Kamar, Nassim; Yoo, Daniel; Chin, Chen-Shan; Bailly, Elodie; Buchler, Matthias; Ladriere, Marc; Le Quintrec, Moglie; Delahousse, Michel; Juric, Ivana; Basic-Jukic, Nikolina; Crespo, Marta; Silva Jr, Helio Tedesco; Linhares, Kamilla; Ribeiro de Castro, Maria Cristina; Pujol, Gervasio Soler; Empana, Jean-Philippe; Ulloa, Camilo; Akalin, Enver; Boehmig, Georg; Huang, Edmund; Stegall, Mark D.; Bentall, Andrew J.; Montgomery, Robert A.; Jordan, Stanley C.; Oberbauer, Rainer; Segev, Dorry L.; Friedewald, John J.; Jouven, Xavier; Legendre, Christophe; Lefaucheur, Carmen; Loupy, Alexandre

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

NATURE COMMUNICATIONS

IF15.7

2021-03-1242

OAAI

Butler, Daniel; Mozsary, Christopher; Meydan, Cem; Foox, Jonathan; Rosiene, Joel; Shaiber, Alon; Danko, David; Afshinnekoo, Ebrahim; MacKay, Matthew; Sedlazeck, Fritz J.; Ivanov, Nikolay A.; Sierra, Maria; Pohle, Diana; Zietz, Michael; Gisladottir, Undina; Ramlall, Vijendra; Sholle, Evan T.; Schenck, Edward J.; Westover, Craig D.; Hassan, Ciaran; Ryon, Krista; Young, Benjamin; Bhattacharya, Chandrima; Ng, Dianna L.; Granados, Andrea C.; Santos, Yale A.; Servellita, Venice; Federman, Scot; Ruggiero, Phyllis; Fungtammasan, Arkarachai; Chin, Chen-Shan; Pearson, Nathaniel M.; Langhorst, Bradley W.; Tanner, Nathan A.; Kim, Youngmi; Reeves, Jason W.; Hether, Tyler D.; Warren, Sarah E.; Bailey, Michael; Gawrys, Justyna; Meleshko, Dmitry; Xu, Dong; Couto-Rodriguez, Mara; Nagy-Szakal, Dorottya; Barrows, Joseph; Wells, Heather; O'Hara, Niamh B.; Rosenfeld, Jeffrey A.; Chen, Ying; Steel, Peter A. D.; Shemesh, Amos J.; Xiang, Jenny; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Iftner, Angelika; Bezdan, Daniela; Sanchez, Elizabeth; Campion, Thomas R., Jr.; Sipley, John; Cong, Lin; Craney, Arryn; Velu, Priya; Melnick, Ari M.; Shapira, Sagi; Hajirasouliha, Iman; Borczuk, Alain; Iftner, Thomas; Salvatore, Mirella; Loda, Massimo; Westblade, Lars F.; Cushing, Melissa; Wu, Shixiu; Levy, Shawn; Chiu, Charles; Schwartz, Robert E.; Tatonetti, Nicholas; Rennert, Hanna; Imielinski, Marcin; Mason, Christopher E.

Trajectories of glomerular filtration rate and progression to end stage kidney disease after kidney transplantation

KIDNEY INTERNATIONAL

IF12.6

2021-01-0141

OAAI

Raynaud, Marc; Aubert, Olivier; Reese, Peter P.; Bouatou, Yassine; Naesens, Maarten; Kamar, Nassim; Bailly, Elodie; Giral, Magali; Ladriere, Marc; Le Quintrec, Moglie; Delahousse, Michel; Juric, Ivana; Basic-Jukic, Nikolina; Gupta, Gaurav; Akalin, Enver; Yoo, Daniel; Chin, Chen-Shan; Proust-Lima, Cecile; Bohmig, Georg; Oberbauer, Rainer; Stegall, Mark D.; Bentall, Andrew J.; Jordan, Stanley C.; Huang, Edmund; Glotz, Denis; Legendre, Christophe; Montgomery, Robert A.; Segev, Dorry L.; Empana, Jean-Philippe; Grams, Morgan E.; Coresh, Josef; Jouven, Xavier; Lefaucheur, Carmen; Loupy, Alexandre

Chromosome-scale, haplotype-resolved assembly of human genomes

人类基因组的染色体规模，单倍型分辨的组装

NATURE BIOTECHNOLOGY

IF41.7

2020-12-07107

OAAI

Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

无扩增长读测序揭示了不可预见的CRISPR-Cas9脱靶活性

GENOME BIOLOGY

IF9.4

2020-12-0125

OAAI

A diploid assembly-based benchmark for variants in the major histocompatibility complex

基于二倍体组装的主要组织相容性复合体变体基准

NATURE COMMUNICATIONS

IF15.7

2020-09-2240

OAAI

Effect of sequence depth and length in long-read assembly of the maize inbred NC358

序列深度和长度对玉米自交系NC358长序列组装的影响

NATURE COMMUNICATIONS

IF15.7

2020-05-0833

OAAI

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

精确的圆形一致性长读测序可改善人类基因组的变异检测和组装

NATURE BIOTECHNOLOGY

IF41.7

2019-08-12995

OAAI

Wenger, Aaron M.; Peluso, Paul; Rowell, William J.; Chang, Pi-Chuan; Hall, Richard J.; Concepcion, Gregory T.; Ebler, Jana; Fungtammasan, Arkarachai; Kolesnikov, Alexey; Olson, Nathan D.; Topfer, Armin; Alonge, Michael; Mahmoud, Medhat; Qian, Yufeng; Chin, Chen-Shan; Phillippy, Adam M.; Schate, Michael C.; Myers, Gene; DePristo, Mark A.; Ruan, Jue; Marschall, Tobias; Sedlazeck, Fritz J.; Zook, Justin M.; Li, Heng; Koren, Sergey; Carroll, Andrew; Rank, David R.; Hunkapiller, Michael W.

Multi-platform discovery of haplotype-resolved structural variation in human genomes

人类基因组单倍型解析结构变异的多平台发现

NATURE COMMUNICATIONS

IF15.7

2019-04-16547

OAAI

Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stuetz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles

Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus (vol 8, 8924, 2018)

SCIENTIFIC REPORTS

IF3.9

2018-08-310

OAAI

Chen-Shan Chin

个人简介

教育背景

工作经历

荣誉奖项

研究方向