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Arkarachai Fungtammasan

dnanexus
H指数:22
被引数:1.0万

个人简介

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教育背景

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工作经历

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荣誉奖项

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Clinical significance of WES-defined ERBB2 amplification in resectable colorectal cancer

WES定义的ERBB2扩增在可切除结直肠癌中的临床意义

International Journal of Clinical Oncology
IF2.8
2026-08-200
OAAI
Kazuki Kishi; Atsushi Hamabe; Yusuke Suwa; Naoya Akazawa; Keiji Hirata; Masataka Ikeda; Mitsuru Yokota; Kentaro Kato; Masahito Kotaka; Yujiro Nishizawa; Hideaki Bando; Yoshiaki Nakamura; Saori Mishima; Tadayoshi Hashimoto; Arkarachai Fungtammasan; Charuta C. Palsuledesai; Robert W. Lentz; Daisuke Kotani; Hiroya Taniguchi; Jun Watanabe; Ichiro Takemasa; Takeshi Kato; Mamoru Uemura; Hidetoshi Eguchi; Yuichiro Doki; Eiji Oki; Takayuki Yoshino
The complete sequence of a human Y chromosome

人类Y染色体的完整序列

Nature
IF48.5
2023-08-230
PRE
Arang Rhie; Sergey Nurk; Monika Cechova; Savannah J. Hoyt; Dylan J. Taylor; Nicolas Altemose; Paul W. Hook; Sergey Koren; Mikko Rautiainen; Ivan A. Alexandrov; Jamie Allen; Mobin Asri; Andrey V. Bzikadze; Nae-Chyun Chen; Chen-Shan Chin; Mark Diekhans; Paul Flicek; Giulio Formenti; Arkarachai Fungtammasan; Carlos Garcia Giron; Erik Garrison; Ariel Gershman; Jennifer L. Gerton; Patrick G. S. Grady; Andrea Guarracino; Leanne Haggerty; Reza Halabian; Nancy F. Hansen; Robert Harris; Gabrielle A. Hartley; William T. Harvey; Marina Haukness; Jakob Heinz; Thibaut Hourlier; Robert M. Hubley; Sarah E. Hunt; Stephen Hwang; Miten Jain; Rupesh K. Kesharwani; Alexandra P. Lewis; Heng Li; Glennis A. Logsdon; Julian K. Lucas; Wojciech Makalowski; Christopher Markovic; Fergal J. Martin; Ann M. Mc Cartney; Rajiv C. McCoy; Jennifer McDaniel; Brandy M. McNulty; Paul Medvedev; Alla Mikheenko; Katherine M. Munson; Terence D. Murphy; Hugh E. Olsen; Nathan D. Olson; Luis F. Paulin; David Porubsky; Tamara Potapova; Fedor Ryabov; Steven L. Salzberg; Michael E. G. Sauria; Fritz J. Sedlazeck; Kishwar Shafin; Valery A. Shepelev; Alaina Shumate; Jessica M. Storer; Likhitha Surapaneni; Angela M. Taravella Oill; Françoise Thibaud-Nissen; Winston Timp; Marta Tomaszkiewicz; Mitchell R. Vollger; Brian P. Walenz; Allison C. Watwood; Matthias H. Weissensteiner; Aaron M. Wenger; Melissa A. Wilson; Samantha Zarate; Yiming Zhu; Justin M. Zook; Evan E. Eichler; Rachel J. O’Neill; Michael C. Schatz; Karen H. Miga; Kateryna D. Makova; Adam M. Phillippy
A chromosome-level reference genome and pangenome for barn swallow population genomics
CELL REPORTS
IF6.9
2023-01-018
OAAI
Secomandi, Simona; Gallo, Guido R.; Sozzoni, Marcella; Iannucci, Alessio; Galati, Elena; Abueg, Linelle; Balacco, Jennifer; Caprioli, Manuela; Chow, William; Ciofi, Claudio; Collins, Joanna; Fedrigo, Olivier; Ferretti, Luca; Fungtammasan, Arkarachai; Haase, Bettina; Howe, Kerstin; Kwak, Woori; Lombardo, Gianluca; Masterson, Patrick; Messina, Graziella; Moller, Anders P.; Mountcastle, Jacquelyn; Mousseau, Timothy A.; Obiol, Joan Ferrer; Olivieri, Anna; Rhie, Arang; Rubolini, Diego; Saclier, Marielle; Stanyon, Roscoe; Stucki, David; Thibaud-Alquati, Francoise; Torrance, James; Torroni, Antonio; Weber, Kristina; Ambrosini, Roberto; Bonisoli-Alquati, Andrea; Jarvis, Erich D.; Gianfranceschi, Luca; Formenti, Giulio
Benchmarking challenging small variants with linked and long reads

具有链接和长读取的具有挑战性的小变体的基准测试

CELL GENOMICS
IF9
2022-05-0151
OAAI
Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; Khan, Ziad; Farek, Jesse; Mahmoud, Medhat; Stankovic, Ana; Kovacevic, Vladimir; Yoo, Byunggil; Miller, Neil; Rosenfeld, Jeffrey A.; Ni, Bohan; Zarate, Samantha; Kirsche, Melanie; Aganezov, Sergey; Schatz, Michael C.; Narzisi, Giuseppe; Byrska-Bishop, Marta; Clarke, Wayne; Evani, Uday S.; Markello, Charles; Shafin, Kishwar; Zhou, Xin; Sidow, Arend; Bansal, Vikas; Ebert, Peter; Marschall, Tobias; Lansdorp, Peter; Hanlon, Vincent; Mattsson, Carl-Adam; Barrio, Alvaro Martinez; Fiddes, Ian T.; Xiao, Chunlin; Fungtammasan, Arkarachai; Chin, Chen-Shan; Wenger, Aaron M.; Rowell, William J.; Sedlazeck, Fritz J.; Carroll, Andrew; Salit, Marc; Zook, Justin M.
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

追求完美: 端粒到端粒基因组组装的验证和抛光策略

NATURE METHODS
IF32.1
2022-03-3148
OA
Cartney, Ann M. Mc; Shafin, Kishwar; Alonge, Michael; Bzikadze, Andrey, V; Formenti, Giulio; Fungtammasan, Arkarachai; Howe, Kerstin; Jain, Chirag; Koren, Sergey; Logsdon, Glennis A.; Miga, Karen H.; Mikheenko, Alla; Paten, Benedict; Shumate, Alaina; Soto, Daniela C.; Sovic, Ivan; Wood, Jonathan Md; Zook, Justin M.; Phillippy, Adam M.; Rhie, Arang
Curated variation benchmarks for challenging medically relevant autosomal genes

具有挑战性的医学相关常染色体基因的策划变异基准

NATURE BIOTECHNOLOGY
IF41.7
2022-02-0776
OAAI
Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; McDaniel, Jennifer; Cheng, Haoyu; Fungtammasan, Arkarachai; Hwang, Yih-Chii; Gupta, Richa; Wenger, Aaron M.; Rowell, William J.; Khan, Ziad M.; Farek, Jesse; Zhu, Yiming; Pisupati, Aishwarya; Mahmoud, Medhat; Xiao, Chunlin; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Miller, Danny E.; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Narzisi, Giuseppe; Evani, Uday Shanker; Clarke, Wayne E.; Lee, Joyce; Mason, Christopher E.; Lincoln, Stephen E.; Miga, Karen H.; Ebbert, Mark T. W.; Shumate, Alaina; Li, Heng; Chin, Chen-Shan; Zook, Justin M.; Sedlazeck, Fritz J.
The complete sequence of a human genome

人类基因组的完整序列

Science
IF45.8
2022-01-010
OAAI
Sergey Nurk; Sergey Koren; Arang Rhie; Mikko Rautiainen; Andrey V. Bzikadze; Alla Mikheenko; Mitchell Robert Vollger; Nicolas Altemose; Lev I. Uralsky; Ariel Gershman; Sergey S. Aganezov; Savannah J. Hoyt; Mark Diekhans; Glennis A. Logsdon; Michael Alonge; Stylianos E. Antonarakis; Matthew Borchers; Gerard G. Bouffard; Shelise Y. Brooks; Gina Viviana Caldas; Nae-Chyun Chen; Haoyu Cheng; Chen-Shan Chin; William Chow; Leonardo Gomes de Lima; Philip C. Dishuck; Richard Michael Durbin; Tatiana Dvorkina; Ian T. Fiddes; Giulio Formenti; Robert S. Fulton; Arkarachai Fungtammasan; Erik P. Garrison; Patrick G. S. Grady; Tina A. Graves-Lindsay; Ira M. Hall; Nancy Fisher Hansen; Gabrielle A. Hartley; Marina Haukness; Kerstin Howe; Michael W. Hunkapiller; Chirag Jain; Miten Jain; Erich David Jarvis; Peter Kerpedjiev; Melanie Kirsche; Mikhail Kolmogorov; Jonas Korlach; Milinn Kremitzki; Heng Li; Valerie V. Braden Maduro; Tobias Marschall; Ann M. Mc Cartney; Jennifer McDaniel; Danny E. Miller; James C. Mullikin; Eugene Wimberly Myers; Nathan D. Olson; Benedict Paten; Paul S. Peluso; Pavel A. Pevzner; David Porubskỳ; Tamara Potapova; Evgeny Ivanovich Rogaev; Jeffrey Rosenfeld; Steven L. Salzberg; Valérie Schneider; Fritz Joachim Sedlazeck; Kishwar Shafin; Colin J. Shew; Alaina Shumate; Ying Sims; Arian F. A. Smit; Daniela C. Soto; Ivan Sović; Jessica M. Storer; Aaron Streets; Beth A. Sullivan; Françoise Thibaud‐Nissen; James Torrance; Justin Wagner; Brian P. Walenz; Aaron M. Wenger; Jonathan M. D. Wood; Chunlin Xiao; Stephanie M. Yan; Alice Young; Samantha Zarate; Urvashi Surti; Rajiv C. McCoy; Megan Y. Dennis; Ivan A. Alexandrov; Jennifer L. Gerton; Rachel J. Waugh O'Neill; Winston Timp; Justin M. Zook; Michael C. Schatz; Evan E. Eichler; Karen H. Miga; Adam M. Phillippy
Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution

加利福尼亚海狮的hi-c支架短读和长读基因组组装在4500万年的进化过程中与同义推理大致一致

MOLECULAR ECOLOGY RESOURCES
IF5.5
2021-06-2711
OAAI
Peart, Claire R.; Williams, Christina; Pophaly, Saurabh D.; Neely, Benjamin A.; Gulland, Frances M. D.; Adams, David J.; Ng, Bee Ling; Cheng, William; Goebel, Michael E.; Fedrigo, Olivier; Haase, Bettina; Mountcastle, Jacquelyn; Fungtammasan, Arkarachai; Formenti, Giulio; Collins, Joanna; Wood, Jonathan; Sims, Ying; Torrance, James; Tracey, Alan; Howe, Kerstin; Rhie, Arang; Hoffman, Joseph, I; Johnson, Jeremy; Jarvis, Erich D.; Breen, Matthew; Wolf, Jochen B. W.
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

完整的脊椎动物有丝分裂基因组揭示了广泛的重复和基因复制

GENOME BIOLOGY
IF9.4
2021-04-2965
OAAI
Formenti, Giulio; Rhie, Arang; Balacco, Jennifer; Haase, Bettina; Mountcastle, Jacquelyn; Fedrigo, Olivier; Brown, Samara; Capodiferro, Marco Rosario; Al-Ajli, Farooq O.; Ambrosini, Roberto; Houde, Peter; Koren, Sergey; Oliver, Karen; Smith, Michelle; Skelton, Jason; Betteridge, Emma; Dolucan, Jale; Corton, Craig; Bista, Iliana; Torrance, James; Tracey, Alan; Wood, Jonathan; Uliano-Silva, Marcela; Howe, Kerstin; McCarthy, Shane; Winkler, Sylke; Kwak, Woori; Korlach, Jonas; Fungtammasan, Arkarachai; Fordham, Daniel; Costa, Vania; Mayes, Simon; Chiara, Matteo; Horner, David S.; Myers, Eugene; Durbin, Richard; Achilli, Alessandro; Braun, Edward L.; Phillippy, Adam M.; Jarvis, Erich D.
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
NATURE COMMUNICATIONS
IF15.7
2021-03-1242
OAAI
Butler, Daniel; Mozsary, Christopher; Meydan, Cem; Foox, Jonathan; Rosiene, Joel; Shaiber, Alon; Danko, David; Afshinnekoo, Ebrahim; MacKay, Matthew; Sedlazeck, Fritz J.; Ivanov, Nikolay A.; Sierra, Maria; Pohle, Diana; Zietz, Michael; Gisladottir, Undina; Ramlall, Vijendra; Sholle, Evan T.; Schenck, Edward J.; Westover, Craig D.; Hassan, Ciaran; Ryon, Krista; Young, Benjamin; Bhattacharya, Chandrima; Ng, Dianna L.; Granados, Andrea C.; Santos, Yale A.; Servellita, Venice; Federman, Scot; Ruggiero, Phyllis; Fungtammasan, Arkarachai; Chin, Chen-Shan; Pearson, Nathaniel M.; Langhorst, Bradley W.; Tanner, Nathan A.; Kim, Youngmi; Reeves, Jason W.; Hether, Tyler D.; Warren, Sarah E.; Bailey, Michael; Gawrys, Justyna; Meleshko, Dmitry; Xu, Dong; Couto-Rodriguez, Mara; Nagy-Szakal, Dorottya; Barrows, Joseph; Wells, Heather; O'Hara, Niamh B.; Rosenfeld, Jeffrey A.; Chen, Ying; Steel, Peter A. D.; Shemesh, Amos J.; Xiang, Jenny; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Iftner, Angelika; Bezdan, Daniela; Sanchez, Elizabeth; Campion, Thomas R., Jr.; Sipley, John; Cong, Lin; Craney, Arryn; Velu, Priya; Melnick, Ari M.; Shapira, Sagi; Hajirasouliha, Iman; Borczuk, Alain; Iftner, Thomas; Salvatore, Mirella; Loda, Massimo; Westblade, Lars F.; Cushing, Melissa; Wu, Shixiu; Levy, Shawn; Chiu, Charles; Schwartz, Robert E.; Tatonetti, Nicholas; Rennert, Hanna; Imielinski, Marcin; Mason, Christopher E.
Chromosome-scale, haplotype-resolved assembly of human genomes

人类基因组的染色体规模，单倍型分辨的组装

NATURE BIOTECHNOLOGY
IF41.7
2020-12-07107
OAAI
Garg, Shilpa; Fungtammasan, Arkarachai; Carroll, Andrew; Chou, Mike; Schmitt, Anthony; Zhou, Xiang; Mac, Stephen; Peluso, Paul; Hatas, Emily; Ghurye, Jay; Maguire, Jared; Mahmoud, Medhat; Cheng, Haoyu; Heller, David; Zook, Justin M.; Moemke, Tobias; Marschall, Tobias; Sedlazeck, Fritz J.; Aach, John; Chin, Chen-Shan; Church, George M.; Li, Heng
Reference genome and demographic history of the most endangered marine mammal, the vaquita
MOLECULAR ECOLOGY RESOURCES
IF5.5
2020-11-2072
OAAI
Morin, Phillip A.; Archer, Frederick I.; Avila, Catherine D.; Balacco, Jennifer R.; Bukhman, Yury V.; Chow, William; Fedrigo, Olivier; Formenti, Giulio; Fronczek, Julie A.; Fungtammasan, Arkarachai; Gulland, Frances M. D.; Haase, Bettina; Peter Heide-Jorgensen, Mads; Houck, Marlys L.; Howe, Kerstin; Misuraca, Ann C.; Mountcastle, Jacquelyn; Musser, Whitney; Paez, Sadye; Pelan, Sarah; Phillippy, Adam; Rhie, Arang; Robinson, Jacqueline; Rojas-Bracho, Lorenzo; Rowles, Teri K.; Ryder, Oliver A.; Smith, Cynthia R.; Stevenson, Sacha; Taylor, Barbara L.; Teilmann, Jonas; Torrance, James; Wells, Randall S.; Westgate, Andrew J.; Jarvis, Erich D.
A diploid assembly-based benchmark for variants in the major histocompatibility complex

基于二倍体组装的主要组织相容性复合体变体基准

NATURE COMMUNICATIONS
IF15.7
2020-09-2240
OAAI
Chin, Chen-Shan; Wagner, Justin; Zeng, Qiandong; Garrison, Erik; Garg, Shilpa; Fungtammasan, Arkarachai; Rautiainen, Mikko; Aganezov, Sergey; Kirsche, Melanie; Zarate, Samantha; Schatz, Michael C.; Xiao, Chunlin; Rowell, William J.; Markello, Charles; Farek, Jesse; Sedlazeck, Fritz J.; Bansal, Vikas; Yoo, Byunggil; Miller, Neil; Zhou, Xin; Carroll, Andrew; Barrio, Alvaro Martinez; Salit, Marc; Marschall, Tobias; Dilthey, Alexander T.; Zook, Justin M.
Effect of sequence depth and length in long-read assembly of the maize inbred NC358

序列深度和长度对玉米自交系NC358长序列组装的影响

NATURE COMMUNICATIONS
IF15.7
2020-05-0833
OAAI
Ou, Shujun; Liu, Jianing; Chougule, Kapeel M.; Fungtammasan, Arkarachai; Seetharam, Arun S.; Stein, Joshua C.; Llaca, Victor; Manchanda, Nancy; Gilbert, Amanda M.; Wei, Sharon; Chin, Chen-Shan; Hufnagel, David E.; Pedersen, Sarah; Snodgrass, Samantha J.; Fengler, Kevin; Woodhouse, Margaret; Walenz, Brian P.; Koren, Sergey; Phillippy, Adam M.; Hannigan, Brett T.; Dawe, R. Kelly; Hirsch, Candice N.; Hufford, Matthew B.; Ware, Doreen
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

精确的圆形一致性长读测序可改善人类基因组的变异检测和组装

NATURE BIOTECHNOLOGY
IF41.7
2019-08-12995
OAAI
Wenger, Aaron M.; Peluso, Paul; Rowell, William J.; Chang, Pi-Chuan; Hall, Richard J.; Concepcion, Gregory T.; Ebler, Jana; Fungtammasan, Arkarachai; Kolesnikov, Alexey; Olson, Nathan D.; Topfer, Armin; Alonge, Michael; Mahmoud, Medhat; Qian, Yufeng; Chin, Chen-Shan; Phillippy, Adam M.; Schate, Michael C.; Myers, Gene; DePristo, Mark A.; Ruan, Jue; Marschall, Tobias; Sedlazeck, Fritz J.; Zook, Justin M.; Li, Heng; Koren, Sergey; Carroll, Andrew; Rank, David R.; Hunkapiller, Michael W.

研究方向

暂未获取到该数据
C
Chen-Shan Chin
H 指数:52论文数:124被引数:2.7万
J
Justin M. Zook
H 指数:54论文数:235被引数:1.8万
F
Fritz J. Sedlazeck
H 指数:67论文数:391被引数:2.9万
A
Adam M. Phillippy
H 指数:94论文数:353被引数:7.7万
A
Arang Rhie
H 指数:53论文数:181被引数:2.5万
S
Sergey Koren
H 指数:87论文数:323被引数:7.3万
G
Giulio Formenti
H 指数:36论文数:174被引数:1.6万
K
Kerstin Howe
H 指数:52论文数:193被引数:3.1万
E
Erich D. Jarvis
H 指数:95论文数:515被引数:4.4万
M
Michael C. Schatz
H 指数:100论文数:446被引数:6.3万