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Andrey Sivachenko

Cystic Fibrosis Foundation

43H指数
203论文数
9.4W被引数
收录论文 32
发表时间
Upregulation of a CI-TR mRNA isoform has therapeutic potential for the treatment of 3′ CI-TR PTC variants上调一种CI-TR mRNA剪接异构体对治疗3′端CI-TR移码突变体具有治疗潜力
err2026-01-01
err0
PREAI
errAllaire, Normand E.; Armstrong, Matthew S.; Yoon, Jae Seok; Walker, Mercy C.; Bhatt, Priyanka; Harrington, Jan M.; Cheng, Yi; Wong, Eric I.; Mahoney, John E.; Valley, Hillary C.; Macadino, Caitlin M.; Bihler, Hermann J.; Sivachenko, Andrey Y.; Cotton, Calvin U.; Carulli, John P.; Mense, Martin
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In vitro modulator responsiveness of 655 CFTR variants found in people with cystic fibrosis
err2024-07-01
err16
errOAAI
errBihler, Hermann; Sivachenko, Andrey; Millen, Linda; Bhatt, Priyanka; Patel, Amita Thakerar; Chin, Justin; Bailey, Violaine; Musisi, Isaac; LaPan, Andre; Allaire, Normand E.; Conte, Joshua; Simon, Noah R.; Magaret, Amalia S.; Raraigh, Karen S.; Cutting, Garry R.; Skach, William R.; Bridges, Robert J.; Thomas, Philip J.; Mense, Martin
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Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells
err2019-07-01
err95
errOAAI
errValley, Hillary C.; Bukis, Katherine M.; Bell, Alisa; Cheng, Yi; Wong, Eric; Jordan, Nikole J.; Allaire, Normand E.; Sivachenko, Andrey; Liang, Feng; Bihler, Hermann; Thomas, Philip J.; Mahiou, Jerome; Mense, Martin
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Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma互补的基因组方法强调PI3K/mTOR途径是骨肉瘤的常见脆弱性
err2014-12-15
err355
errOAAI
errPerry, Jennifer A.; Kiezun, Adam; Tonzi, Peter; Van Allen, Eliezer M.; Carter, Scott L.; Baca, Sylvan C.; Cowley, Glenn S.; Bhatt, Ami S.; Rheinbay, Esther; Pedamallu, Chandra Sekhar; Helman, Elena; Taylor-Weiner, Amaro; McKenna, Aaron; DeLuca, David S.; Lawrence, Michael S.; Ambrogio, Lauren; Sougnez, Carrie; Sivachenko, Andrey; Walensky, Loren D.; Wagle, Nikhil; Mora, Jaume; de Torres, Carmen; Lavarino, Cinzia; Aguiar, Simone Dos Santos; Yunes, Jose Andres; Brandalise, Silvia Regina; Mercado-Celis, Gabriela Elisa; Melendez-Zajgla, Jorge; Cardenas-Cardos, Roco; Velasco-Hidalgo, Liliana; Roberts, Charles W. M.; Garraway, Levi A.; Rodriguez-Galindo, Carlos; Gabriel, Stacey B.; Lander, Eric S.; Golub, Todd R.; Orkin, Stuart H.; Getz, Gad; Janeway, Katherine A.
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The Genomic Landscape of Pediatric Ewing Sarcoma
err2014-11-02
err398
errOAAI
errCrompton, Brian D.; Stewart, Chip; Taylor-Weiner, Amaro; Alexe, Gabriela; Kurek, Kyle C.; Calicchio, Monica L.; Kiezun, Adam; Carter, Scott L.; Shukla, Sachet A.; Mehta, Swapnil S.; Thorner, Aaron R.; de Torres, Carmen; Lavarino, Cinzia; Sunol, Mariona; McKenna, Aaron; Sivachenko, Andrey; Cibulskis, Kristian; Lawrence, Michael S.; Stojanov, Petar; Rosenberg, Mara; Ambrogio, Lauren; Auclair, Daniel; Seepo, Sara; Blumenstiel, Brendan; DeFelice, Matthew; Imaz-Rosshandler, Ivan; Schwarz-Cruz y Celis, Angela; Rivera, Miguel N.; Rodriguez-Galindo, Carlos; Fleming, Mark D.; Golub, Todd R.; Getz, Gad; Mora, Jaume; Stegmaier, Kimberly
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MutationValidator: A computational method for variant cross-validation in next-generation sequencing data
err2014-10-01
err0
PREAI
errRosenberg, Mara; Getz, Gad; Kiezun, Adam; Sivachenko, Andrey
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The genomic landscape of pediatric Ewing sarcoma
err2014-10-01
err0
PREAI
errCrompton, Brian; Stewart, Chip; Taylor-Weiner, Amaro; Alexa, Gabriela; Kurek, Kyle; Calicchio, Monica; Kiezun, Adam; Carter, Scott; Shukla, Sachet; Mehta, Swapnil; Thorner, Aaron; De Torres, Carmen; Lavarino, Cinzia; Sunol, Mariona; McKenna, Aaron; Sivachenko, Andrey; Cibulskis, Kristian; Lawrence, Michael; Ambrogio, Lauren; Auclair, Daniel; Rosshandler, Ivan; Celis, Angela Schwarz-Cruz Y.; Rivera, Miguel; Rodriguez-Galindo, Carlos; Fleming, Mark; Golub, Todd; Getz, Gad; Mora, Jaume; Stegmaier, Kimberly
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Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine福尔马林固定石蜡包埋肿瘤标本全外显子组测序及临床解读指导精准肿瘤医学
err2014-05-18
err455
errOAAI
errVan Allen, Eliezer M.; Wagle, Nikhil; Stojanov, Petar; Perrin, Danielle L.; Cibulskis, Kristian; Marlow, Sara; Jane-Valbuena, Judit; Friedrich, Dennis C.; Kryukov, Gregory; Carter, Scott L.; McKenna, Aaron; Sivachenko, Andrey; Rosenberg, Mara; Kiezun, Adam; Voet, Douglas; Lawrence, Michael; Lichtenstein, Lee T.; Gentry, Jeff G.; Huang, Franklin W.; Fostel, Jennifer; Farlow, Deborah; Barbie, David; Gandhi, Leena; Lander, Eric S.; Gray, Stacy W.; Joffe, Steven; Janne, Pasi; Garber, Judy; MacConaill, Laura; Lindeman, Neal; Rollins, Barrett; Kantoff, Philip; Fisher, Sheila A.; Gabriel, Stacey; Getz, Gad; Garraway, Levi A.
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Comparative analysis of RNA sequencing methods for degraded or low-input samples (vol 10, pg 623, 2013)
err2014-01-30
err2
errOAAI
errAdiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; DeLuca, David S.; Busby, Michele A.; Berlin, Aaron M.; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua Z.
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Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma
err2013-08-13
err163
errOAAI
errLiao, Rachel G.; Jung, Joonil; Tchaicha, Jeremy; Wilkerson, Matthew D.; Sivachenko, Andrey; Beauchamp, Ellen M.; Liu, Qingsong; Pugh, Trevor J.; Pedamallu, Chandra Sekhar; Hayes, D. Neil; Gray, Nathanael S.; Getz, Gad; Wong, Kwok-Kin; Haddad, Robert I.; Meyerson, Matthew; Hammerman, Peter S.
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Comparative analysis of RNA sequencing methods for degraded or low-input samples
err2013-05-19
err443
errOAAI
errAdiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; DeLuca, David S.; Busby, Michele A.; Berlin, Aaron M.; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua Z.
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Dissecting the clonal hierarchy of cancer-driving genomic lesions
err2013-04-01
err1
PREAI
errPrandi, Davide; Baca, Sylvan C.; Lawrence, Michael S.; Mosquera, Juan Miguel; Romanel, Alessandro; Drier, Yotam; Park, Kyung; Kitabayashi, Naoki; MacDonald, Theresa Y.; Van Allen, Eliezer; Kryukov, Gregory V.; Theurillat, Jean-Philippe; Soong, T. David; Nickerson, Elizabeth; Auclair, Daniel; Tewari, Ashutosh; Beltran, Himisha; Onofrio, Robert C.; Boysen, Gunther; Guiducci, Candace; Barbieri, Christopher E.; Cibulskis, Kristian; Sivachenko, Andrey; Carter, Scott L.; Saksena, Gordon; Voet, Douglas; Ramos, Alex H.; Winckler, Wendy; Cipicchio, Michelle; Ardlie, Kristin; Kantoff, Philip W.; Berger, Michael F.; Gabriel, Stacey B.; Golub, Todd R.; Meyerson, Matthew; Lander, Eric S.; Elemento, Olivier; Getz, Gad; Demichelis, Francesca; Rubin, Mark A.; Garraway, Levi A.
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Punctuated evolution of prostate cancer genomes
err2013-04-01
err0
PREAI
errBaca, Sylvan C.; Prandi, Davide; Lawrence, Michael S.; Mosquera, Juan Miguel; Romanei, Alessandro; Drier, Yotam; Park, Kyung; Kitabayashi, Naoki; MacDonald, Theresa Y.; Van Allen, Eliezer; Kryukov, Gregory V.; Theurillat, Jean-Philippe; Soong, T. David; Nickerson, Elizabeth; Auclair, Daniel; Tewari, Ashutosh; Beltran, Himisha; Onofrio, Robert C.; Boysen, Gunther; Guiducci, Candace; Barbieri, Christopher E.; Cibulskis, Kristian; Sivachenko, Andrey; Carter, Scott L.; Voet, Douglas; Saksena, Gordon; Cipicchio, Michelle R.; Ardlie, Kristin; Kantoff, Philip W.; Berger, Michael F.; Gabriel, Stacey B.; Golub, Todd R.; Meyerson, Matthew; Lander, Eric S.; Elemento, Olivier; Getz, Gad; Demichelis, Francesca; Rubin, Mark A.; Garraway, Levi A.
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Analysis of formalin-fixed paraffin-embedded (FFPE) samples.
err2013-04-01
err0
PREAI
errStojenov, Petar; Carter, Scott L.; Rosshandler, Ivan Imaz; Sivachenko, Andrey; Guadarrama, Alberto Salido; Vazquez, Karie; Cordoba, Sandra Romero; Cibulskis, Kristian; Sougnez, Carrie; Voet, Douglas; Saksena, Gordon; Lichtenstein, Lee; Zou, Lihua; Frazer, Scott; Stewart, Chip; Beroukhim, Rameen; Meyerson, Matthew; Lawrence, Michael S.; Getz, Gad
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Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
err2013-03-24
err656
errOAAI
errDulak, Austin M.; Stojanov, Petar; Peng, Shouyong; Lawrence, Michael S.; Fox, Cameron; Stewart, Chip; Bandla, Santhoshi; Imamura, Yu; Schumacher, Steven E.; Shefler, Erica; McKenna, Aaron; Carter, Scott L.; Cibulskis, Kristian; Sivachenko, Andrey; Saksena, Gordon; Voet, Douglas; Ramos, Alex H.; Auclair, Daniel; Thompson, Kristin; Sougnez, Carrie; Onofrio, Robert C.; Guiducci, Candace; Beroukhim, Rameen; Zhou, Zhongren; Lin, Lin; Lin, Jules; Reddy, Rishindra; Chang, Andrew; Landrenau, Rodney; Pennathur, Arjun; Ogino, Shuji; Luketich, James D.; Golub, Todd R.; Gabriel, Stacey B.; Lander, Eric S.; Beer, David G.; Godfrey, Tony E.; Getz, Gad; Bass, Adam J.
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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples不纯和异质癌症样品中体细胞点突变的灵敏检测
err2013-02-10
err3.8K
errOAAI
errCibulskis, Kristian; Lawrence, Michael S.; Carter, Scott L.; Sivachenko, Andrey; Jaffe, David; Sougnez, Carrie; Gabriel, Stacey; Meyerson, Matthew; Lander, Eric S.; Getz, Gad
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Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer外显子组测序鉴定前列腺癌中复发性SPOP,FOXA1和MED12突变
err2012-05-20
err1.4K
errOAAI
errBarbieri, Christopher E.; Baca, Sylvan C.; Lawrence, Michael S.; Demichelis, Francesca; Blattner, Mirjam; Theurillat, Jean-Philippe; White, Thomas A.; Stojanov, Petar; Van Allen, Eliezer; Stransky, Nicolas; Nickerson, Elizabeth; Chae, Sung-Suk; Boysen, Gunther; Auclair, Daniel; Onofrio, Robert C.; Park, Kyung; Kitabayashi, Naoki; MacDonald, Theresa Y.; Sheikh, Karen; Vuong, Terry; Guiducci, Candace; Cibulskis, Kristian; Sivachenko, Andrey; Carter, Scott L.; Saksena, Gordon; Voet, Douglas; Hussain, Wasay M.; Ramos, Alex H.; Winckler, Wendy; Redman, Michelle C.; Ardlie, Kristin; Tewari, Ashutosh K.; Mosquera, Juan Miguel; Rupp, Niels; Wild, Peter J.; Moch, Holger; Morrissey, Colm; Nelson, Peter S.; Kantoff, Philip W.; Gabriel, Stacey B.; Golub, Todd R.; Meyerson, Matthew; Lander, Eric S.; Getz, Gad; Rubin, Mark A.; Garraway, Levi A.
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Uncovering signals of somatic selection through whole exome and whole genome sequencing of lung adenocarcinoma
err2012-04-01
err0
PREAI
errImielinski, Marcin; Hernandez, Bryan; Lawrence, Michael; Hodis, Eran; Kryukov, Grigoriy; Stojanov, Petar; Siyachenko, Andrey; Cibulskis, Kristian; Sougnez, Carrie; Auclair, Daniel; Ardlie, Kristin; Banerji, Shantanu; Hammerman, Peter; Thomas, Roman K.; Gabriel, Stacey; Lander, Eric; Getz, Gad; Meyerson, Matthew
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A glimpse into the somatic mutation landscape of melanoma through exome sequencing of 121 tumor-normal pairs
err2012-04-01
err0
PREAI
errHodis, Eran; Watson, Ian; Theurillats, Jean-Philippe; Zou, Lihua; Place, Chelsea; Nickerson, Elizabeth; Auclair, Daniel; Cibulskis, Kristian; Sivachenko, Andrey; Kryukov, Gregory; Stransky, Nicolas; Ramos, Alex H.; Voet, Douglas; Lawrence, Michael S.; Stojanov, Petar; Saksena, Gordon; McKenna, Aaron; Carter, Scott L.; Pugh, Trevor; Noble, Michael; Lin, Pei; Lichtenstein, Lee; Ambrogio, Lauren; Fennell, Timothy; Chong, Kelly; Winckler, Wendy; Ardlie, Kristin; Landers, Eric S.; Golub, Todd; Meyerson, Matthew; Gabrie, Stacey B.; Getz, Gad; Wagner, Stefan; Schadendorf, Dirk; Hoon, Dave S. B.; Chin, Lynda; Garraway, Levi A.
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Rapid and efficient large-scale somatic mutation validation approaches for cancer genome sequencing
err2012-04-01
err0
PREAI
errCibulskis, Kristian; Sivachenko, Andrey; Hammerman, Peter; Imaz, Ivan; Pugh, Trevor; Sougnezl, Carrie; Winckler, Wendy; Gabriel, Stacey; Getz, Gaddy
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