Stein Aerts - Publications, H-index & Citations

Stein Aerts

csic - andalusian center for developmental biology (cabd)

64H指数

289论文数

2.7W被引数

收录论文 86

发表时间

CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species CREsted: 跨组织和物种的基因组和合成细胞类型特异性增强子建模

Nature Methods

IF32.1

2026-04-02

OAAI

Niklas Kempynck; Seppe De Winter; Casper H. Blaauw; Vasileios Konstantakos; Eren Can Ekşi; Sam Dieltiens; Darina Abaffyová; Valérie Bercier; Ibrahim I. Taskiran; Gert Hulselmans; Katina Spanier; Valerie Christiaens; Ludo Van Den Bosch; Lukas Mahieu; Stein Aerts

Expanding the fly eye gene regulatory network: From Drosophila to the hoverfly Episyrphus balteatus 扩展果蝇眼基因调控网络：从黑腹果蝇到食蚜蝇 Episyrphus balteatus

PLoS Genetics

IF3.7

2026-02-01

PREAI

Navarro, Tomas; Torres, Jesus; Saez-Moreno, Reinaldo; Guerrero, Genoveva; Almudi, Isabel; Iannini, Antonella; Figueras, Javier; Wotton, Karl; Aerts, Stein; Casares, Fernando

Cross-species cellular mapping and humanization of Fcγ receptors to advance antibody modeling Fc γ 受体的跨物种细胞定位和人源化以推进抗体建模

Science Immunology

IF16.3

2026-01-30

PREAI

Karel F. A. Van Damme; Dorine Sichien; Katrien Van der Borght; Justine Van Moorleghem; Sofie Van Gassen; Joseph Jorssen; Seppe De Winter; Elisabeth De Leeuw; Caihong Wang; Qingqing Chai; Anna Brotcke Zumsteg; Michael A. Schmid; Victor Bosteels; Pieter De Bleser; Manon Vanheerswynghels; Sofie De Prijck; Anna Bujko; Clint De Nolf; Martijn J. Schuijs; Bram Van Den Eeckhout; Ilse Rogiers; Robin Browaeys; Flore Thielemans; Katrien Quintelier; Jinke D’Hont; Tino Hochepied; Patricia Isnard Petit; Séverine Augier; Rachel Courtois; Stijn Verwaerde; Stijn Vanhee; Sjoerd Schetters; Charlotte L. Scott; Stein Aerts; Yvan Saeys; Alan J. Korman; Fabio Benigni; Davide Corti; Sophie Janssens; Niels Vandamme; Antonio P. Baptista; Christophe Desmet; Dirk Elewaut; Hamida Hammad; Ariane Morel; Eric Vivier; Fabiane Sônego; Kader Thiam; Sofie Voet; Bianca Balbino; Bart N. Lambrecht

The evolution of gene regulation in mammalian cerebellum development 哺乳动物小脑发育过程中基因调控的进化

Science

IF45.8

2026-01-29

PREAI

Ioannis Sarropoulos; Mari Sepp; Tetsuya Yamada; Philipp S. L. Schäfer; Nils Trost; Julia Schmidt; Céline Schneider; Charis Drummer; Sophie Mißbach; Ibrahim I. Taskiran; Nikolai Hecker; Carmen Bravo González-Blas; Robert Frömel; Piyush Joshi; Evgeny Leushkin; Frederik Arnskötter; Kevin Leiss; Konstantin Okonechnikov; Steven Lisgo; Miklós Palkovits; Svante Pääbo; Margarida Cardoso-Moreira; Lena M. Kutscher; Rüdiger Behr; Stefan M. Pfister; Stein Aerts; Henrik Kaessmann

Evaluating single-cell ATAC-seq atlasing technologies using sequence-to-function modeling 使用序列到功能建模评估单细胞atac-seq atlasing技术

Nature Communications

IF15.7

2026-01-22

OAAI

Hannah Dickmänken; Marta Wojno; Lukas Mahieu; Koen Theunis; Eren Can Ekşi; Valerie Christiaens; Niklas Kempynck; Florian V. De Rop; Natalie Roels; Katina I. Spanier; Roel Vandepoel; Gert Hulselmans; Suresh Poovathingal; Stein Aerts

Axonal Eif5a hypusination controls local translation and mitigates defects in FUS-ALS 轴突Eif5a催眠控制局部翻译并减轻fus-als的缺陷

Nature Neuroscience

IF20

2025-12-22

OAAI

Diana Piol; Bilal Khalil; Tessa Robberechts; Theo Killian; Maria Georgopoulou; Gabriele Partel; David Wouters; Nikolai Hecker; Paraskevi Tziortzouda; Yana Verresen; Nikky Corthout; Sam Kint; Katy Vandereyken; Philip Van Damme; Thierry Voet; Kristofer Davie; Suresh Poovathingal; Ludo Van Den Bosch; Stein Aerts; Alejandro Sifrim; Sandrine Da Cruz

Decoding cnidarian cell type gene regulation 解析刺胞动物细胞类型基因调控

Nature Ecology & Evolution

IF14.5

2025-12-22

PREAI

Anamaria Elek; Marta Iglesias; Lukas Mahieu; Grygoriy Zolotarov; Xavier Grau-Bové; Stein Aerts; Arnau Sebé-Pedrós

Single-cell mapping of alternative splicing linked to checkpoint immunotherapy response 单细胞图谱分析：与免疫检查点疗法反应相关的选择性剪接

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-26

PREAI

Xiong, Jieyi; Bricard, Orian; Arijs, Ingrid; Demeulemeester, Jonas; Gu, Chen; Thienpont, Bernard; Daaboul, Danie; Bassez, Ayse; Bechter, Oliver; Pozniak, Joanna; Vos, Hanne; Nevelsteen, Ines; Torfs, Sofie; Santos, Sara Aibar; Lan, Qing; Hou, Yong; Van oudenhove, Lore; Boons, Gitta; Qian, Junbin; Aerts, Stein; Smeets, Ann; Marine, Jean-Christophe; Lambrechts, Diether

A dynamic gene regulatory code drives synaptic development of hippocampal granule cells 一个动态的基因调控密码驱动海马颗粒细胞的突触发育

Science Advances

IF12.5

2025-10-22

PREAI

Blanca Lorente-Echeverría; Danie Daaboul; Jeroen Vandensteen; Gabriele Marcassa; Willem Naert; Joris Vandenbempt; Elke Leysen; Malou Reverendo; Ine Vlaeminck; Lise Vervloessem; Jochen Lamote; Suresh Poovathingal; Kristofer Davie; Keimpe Wierda; Dan Dascenco; Stein Aerts; Joris de Wit

The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution 《生物多样性细胞图谱：以细胞分辨率的尺度绘制生命之树》

Nature

IF48.5

2025-09-24

PREAI

Arnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang

Nova-ST: Nano-patterned ultra-dense platform for spatial transcriptomics

CELL REPORTS METHODS

IF4.5

2024-08-01

OAAI

Poovathingal, Suresh; Davie, Kristofer; Borm, Lars E.; Vandepoel, Roel; Poulvellarie, Nicolas; Verfaillie, Annelien; Corthout, Nikky; Aerts, Stein

p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity (vol 8, pg 861, 2016)p53诱导含有NEAT1 lncRNA的副斑的形成，调节复制应激反应和化学敏感性 (第8卷，861页，2016)

NATURE MEDICINE

IF50

2024-02-08

OAAI

Adriaens, Carmen; Standaert, Laura; Barra, Jasmine; Latil, Mathilde; Verfaillie, Annelien; Kalev, Peter; Boeckx, Bram; Wijnhoven, Paul. W. G.; Radaelli, Enrico; Vermi, William; Leucci, Eleonora; Lapouge, Gaelle; Beck, Benjamin; van den Oord, Joost; Nakagawa, Shinichi; Hirose, Tetsuro; Sablina, Anna. A.; Lambrechts, Diether; Aerts, Stein; Blanpain, Cedric; Marine, Jean-Christophe

Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation

NATURE CELL BIOLOGY

IF19.1

2024-01-05

OAAI

Bravo Gonzalez-Blas, Carmen; Matetovici, Irina; Hillen, Hanne; Taskiran, Ibrahim Ihsan; Vandepoel, Roel; Christiaens, Valerie; Sansores-Garcia, Leticia; Verboven, Elisabeth; Hulselmans, Gert; Poovathingal, Suresh; Demeulemeester, Jonas; Psatha, Nikoleta; Mauduit, David; Halder, Georg; Aerts, Stein

Systematic benchmarking of single-cell ATAC-sequencing protocols 单细胞ATAC测序方案的系统基准测试

NATURE BIOTECHNOLOGY

IF41.7

2023-08-03

OAAI

De Rop, Florian V.; Hulselmans, Gert; Flerin, Chris; Soler-Vila, Paula; Rafels, Albert; Christiaens, Valerie; Gonzalez-Blas, Carmen Bravo; Marchese, Domenica; Caratu, Ginevra; Poovathingal, Suresh; Rozenblatt-Rosen, Orit; Slyper, Michael; Luo, Wendy; Muus, Christoph; Duarte, Fabiana; Shrestha, Rojesh; Bagdatli, S. Tansu; Corces, M. Ryan; Mamanova, Lira; Knights, Andrew; Meyer, Kerstin B.; Mulqueen, Ryan; Taherinasab, Akram; Maschmeyer, Patrick; Pezoldt, Jörn; Lambert, Camille Lucie Germaine; Iglesias, Marta; Najle, Sebastian R.; Dossani, Zain Y.; Martelotto, Luciano G.; Burkett, Zach; Lebofsky, Ronald; Martin-Subero, Jose Ignacio; Pillai, Satish; Sebe-Pedros, Arnau; Deplancke, Bart; Teichmann, Sarah A.; Ludwig, Leif S.; Braun, Theodore P.; Adey, Andrew C.; Greenleaf, William J.; Buenrostro, Jason D.; Regev, Aviv; Aerts, Stein; Heyn, Holger

SCENIC plus : single-cell multiomic inference of enhancers and gene regulatory networks SCENIC plus: 增强子和基因调控网络的单细胞多组推断

NATURE METHODS

IF32.1

2023-07-13

OAAI

Gonzalez-Blas, Carmen Bravo; De Winter, Seppe; Hulselmans, Gert; Hecker, Nikolai; Matetovici, Irina; Christiaens, Valerie; Poovathingal, Suresh; Wouters, Jasper; Aibar, Sara; Aerts, Stein

Shared enhancer gene regulatory networks between wound and oncogenic programs

ELIFE

IF0

2023-05-03

OAAI

Floc'hlay, Swann; Balaji, Ramya; Stankovic, Dimitrije; Christiaens, Valerie M.; Gonzalez-Blas, Carmen Bravo; De Winter, Seppe; Hulselmans, Gert J.; De Waegeneer, Maxime; Quan, Xiaojiang; Koldere, Duygu; Atkins, Mardelle; Halder, Georg; Uhlirova, Mirka; Classen, Anne-Kathrin; Aerts, Stein

Neuronal identity defines a-synuclein and tau toxicity

NEURON

IF15

2023-05-01

OAAI

Praschberger, Roman; Kuenen, Sabine; Schoovaerts, Nils; Kaempf, Natalie; Singh, Jeevanjot; Janssens, Jasper; Swerts, Jef; Nachman, Eliana; Calatayud, Carles; Aerts, Stein; Poovathingal, Suresh; Verstreken, Patrik

Emerging questions in transcriptional regulation

CELL SYSTEMS

IF7.7

2023-04-01

PREAI

Nora, Elphege P.; Aerts, Stein; Wittkopp, Patricia J.; Bussemaker, Harmen J.; Bulyk, Martha; Sinha, Saurabh; Zeitlinger, Julia; Crocker, Justin; Bass, Juan Ignacio Fuxman

Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation

CELLS

IF5.2

2023-03-21

OAAI

Naus, Evelyne; Derweduwe, Marleen; Lampi, Youlia; Claeys, Annelies; Pauwels, Jarne; Langenberg, Tobias; Claes, Filip; Xu, Jie; Haemels, Veerle; Atak, Zeynep Kalender; van der Kant, Rob; Van Durme, Joost; De Baets, Greet; Ligon, Keith L.; Fiers, Mark; Gevaert, Kris; Aerts, Stein; Rousseau, Frederic; Schymkowitz, Joost; De Smet, Frederik

Cell type diversity in a developing octopus brain

NATURE COMMUNICATIONS

IF15.7

2022-11-30

OAAI

Styfhals, Ruth; Zolotarov, Grygoriy; Hulselmans, Gert; Spanier, Katina I.; Poovathingal, Suresh; Elagoz, Ali M.; De Winter, Seppe; Deryckere, Astrid; Rajewsky, Nikolaus; Ponte, Giovanna; Fiorito, Graziano; Aerts, Stein; Seuntjens, Eve

研究方向