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J

Jianlin Cheng

University of Missouri System

67H-index
515Paper Count
2.3WCitation Count
Published Papers 142
Publication Date
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Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction
errNAR Genomics and Bioinformatics
IF2.8
err2026-05-06
err0
errOAAI
errShreya Basnet; Jianlin Cheng
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PreStoi allows accurate prediction of protein complex stoichiometry by integrating AlphaFold3 and template information
errCommunications Biology
IF5.1
err2026-04-28
err0
errOAAI
errJian Liu; Pawan Neupane; Jianlin Cheng
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errSave
Flow matching for generative modelling in bioinformatics and computational biology
errNature Machine Intelligence
IF23.9
err2026-04-23
err0
PREAI
errAlex Morehead; Lazar Atanackovic; Akshata Hegde; Yanli Wang; Frimpong Boadu; Joel Selvaraj; Alexander Tong; Aditi Krishnapriyan; Jianlin Cheng
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errSave
GRNFormer: accurate gene regulatory network inference using graph transformer
errBioinformatics
IF5.4
err2026-04-01
err0
PREAI
errHegde, Akshata; Cheng, Jianlin
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errSave
Artificial intelligence methods for protein structure and interaction prediction: Recent advances and challenges
errCurrent Opinion in Structural Biology
IF7
err2026-03-16
err0
PREAI
errAlex Morehead; Jian Liu; Pawan Neupane; Jianlin Cheng
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errSave
CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs
errViruses
IF3.5
err2026-02-15
err0
errOAAI
errRajan Gyawali; Ashwin Dhakal; Liguo Wang; Jianlin Cheng
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Unavailability of experimental 3D structural data on protein folding dynamics and necessity for a new generation of structure prediction methods in this context
errBioinformatics
IF5.4
err2026-02-01
err0
PREAI
errWells, Aydin; Newaz, Khalique; Morones, Jennifer; Cheng, Jianlin; Milenkovic, Tijana
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Assessing the potential of deep learning for protein–ligand docking
errNature Machine Intelligence
IF23.9
err2025-12-31
err0
errOAAI
errAlex Morehead; Nabin Giri; Jian Liu; Pawan Neupane; Jianlin Cheng
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Machine learning approach to identify significant genes and classify cancer types from RNA-seq data
errGlobal Medical Genetics
IF1.5
err2025-12-01
err0
errOAAI
errAkter, Sultana; Adesola, Ridwan Olamilekan; Basnet, Shreya
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Boosting AlphaFold protein tertiary structure prediction through MSA engineering and extensive model sampling and ranking in CASP16
errCommunications Biology
IF5.1
err2025-11-17
err0
errOAAI
errJian Liu; Pawan Neupane; Jianlin Cheng
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Enhancer Rewiring Orchestrates Inflammation and Loss of Cell Identity During Muscle Stem Cell Aging
errAGING CELL
IF7.1
err2025-11-01
err0
errOAAI
errShi, Changyou; Yang, Na; Pizano, Evelyn; Wang, Lin; Occean, James R.; Cui, Chang-yi; Liu, Ling; Dunn, Christopher; Boadu, Frimpong; Meng, Qiong; Banskota, Nirad; Yang, Jen-hao; Fan, Jinshui; De, Supriyo; Cheng, Jianlin; Rando, Thomas A.; Sartorelli, Vittorio; Sen, Payel
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MPBind: a multitask protein binding site predictor using protein language models and equivariant GNNs
errBIOINFORMATICS
IF5.4
err2025-11-01
err0
errOAAI
errWang, Yanli; Boadu, Frimpong; Cheng, Jianlin
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Multimodal deep learning integration of cryo-EM and AlphaFold3 for high-accuracy protein structure determination
errCommunications Chemistry
IF6.2
err2025-10-31
err0
errOAAI
errRajan Gyawali; Ashwin Dhakal; Jianlin Cheng
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Machine learning methods for gene regulatory network inference
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-09-01
err0
errOAAI
errHegde, Akshata; Nguyen, Tom; Cheng, Jianlin
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Highlights of Model Quality Assessment in CASP16
errproteins structure function and bioinformatics
IF0
err2025-08-14
err0
PREAI
errAlisia Fadini; Recep Adiyaman; Shaima N. Alhaddad; Behnosh Behzadi; Jianlin Cheng; Xinyue Cui; Nicholas S. Edmunds; Lydia Freddolino; Ahmet G. Genc; Fang Liang; Dong Liu; Jian Liu; Quancheng Liu; Liam J. McGuffin; Pawan Neupane; Chunxiang Peng; David R. Shortle; Meng Sun; Haodong Wang; Qiqige Wuyun; Guijun Zhang; Xuanfeng Zhao; Wei Zheng; Randy J. Read
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Atomistic Modeling of Bio-Nano Hybrids: Interactions between Iron Oxide Nanoparticles and the Outer Membrane of Shewanella
errACS Biomaterials Science & Engineering
IF5.5
err2025-07-24
err0
PREAI
errShuting Zhang; Jiahuiyu Fang; Pranab Sarker; Xiaoxue Qin; Jian Liu; Yijin Mao; Jianlin Cheng; Mark J. Uline; Tao Wei
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Guest Editorial for Special Section on ACM BCB 2023
errieee acm transactions on computational biology and bioinformatics
IF0
err2025-07-01
err0
PREAI
errJianlin Cheng; Jing He; Mehmet Koyutürk
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FlowDock: Geometric flow matching for generative protein-ligand docking and affinity prediction
errBIOINFORMATICS
IF5.4
err2025-07-01
err2
errOAAI
errMorehead, Alex; Cheng, Jianlin
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Improving AlphaFold2- and AlphaFold3-Based Protein Complex Structure Prediction With MULTICOM4 in CASP16
errproteins structure function and bioinformatics
IF0
err2025-06-02
err0
PREAI
errJian Liu; Pawan Neupane; Jianlin Cheng
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errSave
Global modulation of gene expression and transcriptome size in aneuploid combinations of maize
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-05-01
err0
errOAAI
errYang, Hua; Brennan, Vincent; Gao, Zhi; Liu, Jian; Boadu, Frimpong; Cheng, Jianlin
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Research Directions

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Co-authors
Cooperation Journals
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P
Peter A. Merkel
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J
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H-index: 112 · Papers: 511
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