Luyi Tian - Publications, H-index & Citations

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Luyi Tian

Guangzhou Medical University

24H-index

79Paper Count

3.8KCitation Count

Published Papers 22

Publication Date

Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis

Nature Genetics

IF29

2026-09-02

PREAI

Matthew G. Jones; Dawei Sun; Kyung Hoi Joseph Min; William N. Colgan; Haoyu Wang; Tivadar Török; Juliano Ribeiro; Jessie Xue; Erik C. Cardoso; Yao Rong; Luyi Tian; Jackson A. Weir; Victor Z. Chen; Luke W. Koblan; Kathryn E. Yost; Nicolas Mathey-Andrews; Edridge D’Souza; Andrew J. C. Russell; Robert R. Stickels; Karol S. Balderrama; William M. Rideout; Min Dai; Giovanni Marrero; Vipin Kumar; Anjali Saqi; Benjamin Herzberg; Benjamin Izar; Howard Y. Chang; Joo-Hyeon Lee; Tyler Jacks; Fei Chen; Jonathan S. Weissman; Nir Yosef; Dian Yang

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Graph-based contrastive learning enables unified integration and niche transfer across single-cell and spatial multi-omics

Briefings in Bioinformatics

IF7.7

2026-08-18

OAAI

Weige Zhou; Xueying Fan; Lanxiang Li; Jianrong Zheng; Xiaodong Liu; Wenfei Jin; Luyi Tian

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Unveiling gene modules at Atlas scale through hierarchical clustering of single-cell data

Nature Communications

IF15.7

2026-05-26

OAAI

Feng Tang; Zhongmin Zhang; Weige Zhou; Guangpeng Li; Yang Xu; Luyi Tian

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A three-dimensional spatial transcriptome atlas reconstructs early organogenesis in primate Carnegie stages 9 and 10 embryos

Nature Cell Biology

IF19.1

2026-05-07

PREAI

Jia Ping Tan; Yifang Liu; Yuting Fu; Langchao Liang; Yan Wu; Tiantian Guo; Shikai Jia; Yujia Jiang; Tingli Yuan; Jie Li; Yixin Li; Zhi Huang; Shenglong Li; Jie Li; Xixi Yan; Zizhuo Liao; Xiaojing Liu; Bowen Hu; Shujie Fu; Shijie Hao; Luyi Tian; Zhen Liu; Leqian Yu; Longqi Liu; Xiaodong Liu

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stPipe: a flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data

NAR GENOMICS AND BIOINFORMATICS

IF2.8

2025-12-01

OAAI

Xu, Yang; Sargeant, Callum J.; You, Yue; You, Yupei; Su, Shian; Wang, Changqing; Tian, Luyi; Chen, Yunshun; Ritchie, Matthew E.

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Single-cell Rapid Capture Hybridization sequencing reliably detects isoform usage and coding mutations in targeted genes

GENOME RESEARCH

IF5.5

2025-01-10

PREAI

Peng, Hongke; Jabbari, Jafar S.; Tian, Luyi; Wang, Changqing; You, Yupei; Chua, Chong Chyn; Anstee, Natasha S.; Wei, Andrew H.; Davidson, Nadia M.; Roberts, Andrew W.; Huang, David C. S.; Ritchie, Matthew E.; Thijssen, Rachel

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Viral capsid-mediated efficient cell labeling of micron-sized magnetic particles for highly sensitive long-term in vivo tumor cells MRI tracking

CHEMICAL ENGINEERING JOURNAL

IF13.2

2024-10-01

PREAI

Feng, Xiayi; Gao, Ding; Zhou, Juan; Gui, Zhu; Cai, Aoling; Wang, Jie; Dai, Ji; Jing, Yipeng; Qian, Junchao; Cui, Zongqiang; Li, Lanxiang; You, Yue; Tian, Luyi; Zhang, Xian-En; Men, Dong

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Systematic comparison of sequencing-based spatial transcriptomic methods

NATURE METHODS

IF32.1

2024-07-04

OAAI

You, Yue; Fu, Yuting; Li, Lanxiang; Zhang, Zhongmin; Jia, Shikai; Lu, Shihong; Ren, Wenle; Liu, Yifang; Xu, Yang; Liu, Xiaojing; Jiang, Fuqing; Peng, Guangdun; Sampath Kumar, Abhishek; Ritchie, Matthew E.; Liu, Xiaodong; Tian, Luyi

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Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

NATURE METHODS

IF32.1

2023-10-02

OAAI

Dong, Xueyi; Du, Mei R. M.; Gouil, Quentin; Tian, Luyi; Jabbari, Jafar S.; Bowden, Rory; Baldoni, Pedro L.; Chen, Yunshun; Smyth, Gordon K.; Amarasinghe, Shanika L.; Law, Charity W.; Ritchie, Matthew E.

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A posterior probability based Bayesian method for single-cell RNA-seq data imputation

METHODS

IF4.3

2023-08-01

PREAI

Chen, Siqi; Zheng, Ruiqing; Tian, Luyi; Wu, Fang-Xiang; Li, Min

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Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

NATURE GENETICS

IF31.8

2023-07-06

OAAI

Kumar, Abhishek Sampath; Tian, Luyi; Bolondi, Adriano; Hernandez, Amelia Aragones; Stickels, Robert; Kretzmer, Helene; Murray, Evan; Wittler, Lars; Walther, Maria; Barakat, Gabriel; Haut, Leah; Elkabetz, Yechiel; Macosko, Evan Z.; Guignard, Leo; Chen, Fei; Meissner, Alexander

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The expanding vistas of spatial transcriptomics

NATURE BIOTECHNOLOGY

IF41.7

2022-10-03

139

PREAI

Tian, Luyi; Chen, Fei; Macosko, Evan Z.

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Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

GENOME BIOLOGY

IF9.4

2021-12-14

OAAI

You, Yue; Tian, Luyi; Su, Shian; Dong, Xueyi; Jabbari, Jafar S.; Hickey, Peter F.; Ritchie, Matthew E.

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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing

GENOME BIOLOGY

IF9.4

2021-11-11

OAAI

Tian, Luyi; Jabbari, Jafar S.; Thijssen, Rachel; Gouil, Quentin; Amarasinghe, Shanika L.; Voogd, Oliver; Kariyawasam, Hasaru; Du, Mei R. M.; Schuster, Jakob; Wang, Changqing; Su, Shian; Dong, Xueyi; Law, Charity W.; Lucattini, Alexis; Prawer, Yair David Joseph; Collar-Fernandez, Coralina; Chung, Jin D.; Naim, Timur; Chan, Audrey; Ly, Chi Hai; Lynch, Gordon S.; Ryall, James G.; Anttila, Casey J. A.; Peng, Hongke; Anderson, Mary Ann; Flensburg, Christoffer; Majewski, Ian; Roberts, Andrew W.; Huang, David C. S.; Clark, Michael B.; Ritchie, Matthew E.

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Modulation of Vagal Sensory Neurons via High Mobility Group Box-1 and Receptor for Advanced Glycation End Products: Implications for Respiratory Viral Infections

FRONTIERS IN PHYSIOLOGY

IF3.4

2021-09-21

OAAI

Mazzone, Stuart B.; Yang, Seung-Kwon; Keller, Jennifer A.; Simanauskaite, Juste; Arikkatt, Jaisy; Fogarty, Matthew J.; Moe, Aung Aung Kywe; Chen, Chen; Trewella, Matthew W.; Tian, Luyi; Ritchie, Matthew E.; Chua, Brendan Y.; Phipps, Simon; Short, Kirsty R.; McGovern, Alice E.

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Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development

IMMUNITY

IF26.3

2021-06-01

OAAI

Tian, Luyi; Tomei, Sara; Schreuder, Jaring; Weber, Tom S.; Amann-Zalcenstein, Daniela; Lin, Dawn S.; Tran, Jessica; Audiger, Cindy; Chu, Mathew; Jarratt, Andrew; Willson, Tracy; Hilton, Adrienne; Pang, Ee Shan; Patton, Timothy; Kelly, Madison; Su, Shian; Gouil, Quentin; Diakumis, Peter; Bahlo, Melanie; Sargeant, Toby; Kats, Lev M.; Hodgkin, Philip D.; O'Keeffe, Meredith; Ng, Ashley P.; Ritchie, Matthew E.; Naik, Shalin H.

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The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools

genomics proteomics bioinformatics

IF2.8

2021-04-26

OAAI

Dong, Xueyi; Tian, Luyi; Gouil, Quentin; Kariyawasam, Hasaru; Su, Shian; De Paoli-Iseppi, Ricardo; Prawer, Yair David Joseph; Clark, Michael B.; Breslin, Kelsey; Iminitoff, Megan; Blewitt, Marnie E.; Law, Charity W.; Ritchie, Matthew E.

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Single-cell analyses reveal the clonal and molecular aetiology of Flt3L-induced emergency dendritic cell development

NATURE CELL BIOLOGY

IF19.1

2021-03-01

PREAI

Lin, Dawn S.; Tian, Luyi; Tomei, Sara; Amann-Zalcenstein, Daniela; Baldwin, Tracey M.; Weber, Tom S.; Schreuder, Jaring; Stonehouse, Olivia J.; Rautela, Jai; Huntington, Nicholas D.; Taoudi, Samir; Ritchie, Matthew E.; Hodgkin, Philip D.; Ng, Ashley P.; Nutt, Stephen L.; Naik, Shalin H.

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A new lymphoid-primed progenitor marked byDach1downregulation identified with single cell multi-omics

NATURE IMMUNOLOGY

IF27.6

2020-10-19

PREAI

Amann-Zalcenstein, Daniela; Tian, Luyi; Schreuder, Jaring; Tomei, Sara; Lin, Dawn S.; Fairfax, Kirsten A.; Bolden, Jessica E.; McKenzie, Mark D.; Jarratt, Andrew; Hilton, Adrienne; Jackson, Jacob T.; Di Rago, Ladina; McCormack, Matthew P.; de Graaf, Carolyn A.; Stonehouse, Olivia; Taoudi, Samir; Alexander, Warren S.; Nutt, Stephen L.; Ritchie, Matthew E.; Ng, Ashley P.; Naik, Shalin H.

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Introduction and validation of a new semi-automated method to determine sympathetic fiber density in target tissues

BRAIN BEHAVIOR AND IMMUNITY

IF7.6

2019-10-01

PREAI

Bleck, D.; Ma, L.; Brinks, R.; Schneider, M.; Tian, L.; Pongratz, G.

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Research Directions