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Single-cell Rapid Capture Hybridization sequencing reliably detects isoform usage and coding mutations in targeted genes Peng, Hongke; Jabbari, Jafar S.; Tian, Luyi; Wang, Changqing; You, Yupei; Chua, Chong Chyn; Anstee, Natasha S.; Wei, Andrew H.; Davidson, Nadia M.; Roberts, Andrew W.; Huang, David C. S.; Ritchie, Matthew E.; Thijssen, Rachel Share Save
Viral capsid-mediated efficient cell labeling of micron-sized magnetic particles for highly sensitive long-term in vivo tumor cells MRI tracking Feng, Xiayi; Gao, Ding; Zhou, Juan; Gui, Zhu; Cai, Aoling; Wang, Jie; Dai, Ji; Jing, Yipeng; Qian, Junchao; Cui, Zongqiang; Li, Lanxiang; You, Yue; Tian, Luyi; Zhang, Xian-En; Men, Dong Share Save
Systematic comparison of sequencing-based spatial transcriptomic methods You, Yue; Fu, Yuting; Li, Lanxiang; Zhang, Zhongmin; Jia, Shikai; Lu, Shihong; Ren, Wenle; Liu, Yifang; Xu, Yang; Liu, Xiaojing; Jiang, Fuqing; Peng, Guangdun; Sampath Kumar, Abhishek; Ritchie, Matthew E.; Liu, Xiaodong; Tian, Luyi Share Save
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures Dong, Xueyi; Du, Mei R. M.; Gouil, Quentin; Tian, Luyi; Jabbari, Jafar S.; Bowden, Rory; Baldoni, Pedro L.; Chen, Yunshun; Smyth, Gordon K.; Amarasinghe, Shanika L.; Law, Charity W.; Ritchie, Matthew E. Share Save
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Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis Kumar, Abhishek Sampath; Tian, Luyi; Bolondi, Adriano; Hernandez, Amelia Aragones; Stickels, Robert; Kretzmer, Helene; Murray, Evan; Wittler, Lars; Walther, Maria; Barakat, Gabriel; Haut, Leah; Elkabetz, Yechiel; Macosko, Evan Z.; Guignard, Leo; Chen, Fei; Meissner, Alexander Share Save
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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing Tian, Luyi; Jabbari, Jafar S.; Thijssen, Rachel; Gouil, Quentin; Amarasinghe, Shanika L.; Voogd, Oliver; Kariyawasam, Hasaru; Du, Mei R. M.; Schuster, Jakob; Wang, Changqing; Su, Shian; Dong, Xueyi; Law, Charity W.; Lucattini, Alexis; Prawer, Yair David Joseph; Collar-Fernandez, Coralina; Chung, Jin D.; Naim, Timur; Chan, Audrey; Ly, Chi Hai; Lynch, Gordon S.; Ryall, James G.; Anttila, Casey J. A.; Peng, Hongke; Anderson, Mary Ann; Flensburg, Christoffer; Majewski, Ian; Roberts, Andrew W.; Huang, David C. S.; Clark, Michael B.; Ritchie, Matthew E. Share Save
Modulation of Vagal Sensory Neurons via High Mobility Group Box-1 and Receptor for Advanced Glycation End Products: Implications for Respiratory Viral Infections Mazzone, Stuart B.; Yang, Seung-Kwon; Keller, Jennifer A.; Simanauskaite, Juste; Arikkatt, Jaisy; Fogarty, Matthew J.; Moe, Aung Aung Kywe; Chen, Chen; Trewella, Matthew W.; Tian, Luyi; Ritchie, Matthew E.; Chua, Brendan Y.; Phipps, Simon; Short, Kirsty R.; McGovern, Alice E. Share Save
Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development Tian, Luyi; Tomei, Sara; Schreuder, Jaring; Weber, Tom S.; Amann-Zalcenstein, Daniela; Lin, Dawn S.; Tran, Jessica; Audiger, Cindy; Chu, Mathew; Jarratt, Andrew; Willson, Tracy; Hilton, Adrienne; Pang, Ee Shan; Patton, Timothy; Kelly, Madison; Su, Shian; Gouil, Quentin; Diakumis, Peter; Bahlo, Melanie; Sargeant, Toby; Kats, Lev M.; Hodgkin, Philip D.; O'Keeffe, Meredith; Ng, Ashley P.; Ritchie, Matthew E.; Naik, Shalin H. Share Save
The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools Dong, Xueyi; Tian, Luyi; Gouil, Quentin; Kariyawasam, Hasaru; Su, Shian; De Paoli-Iseppi, Ricardo; Prawer, Yair David Joseph; Clark, Michael B.; Breslin, Kelsey; Iminitoff, Megan; Blewitt, Marnie E.; Law, Charity W.; Ritchie, Matthew E. Share Save
Single-cell analyses reveal the clonal and molecular aetiology of Flt3L-induced emergency dendritic cell development Lin, Dawn S.; Tian, Luyi; Tomei, Sara; Amann-Zalcenstein, Daniela; Baldwin, Tracey M.; Weber, Tom S.; Schreuder, Jaring; Stonehouse, Olivia J.; Rautela, Jai; Huntington, Nicholas D.; Taoudi, Samir; Ritchie, Matthew E.; Hodgkin, Philip D.; Ng, Ashley P.; Nutt, Stephen L.; Naik, Shalin H. Share Save
A new lymphoid-primed progenitor marked byDach1downregulation identified with single cell multi-omics Amann-Zalcenstein, Daniela; Tian, Luyi; Schreuder, Jaring; Tomei, Sara; Lin, Dawn S.; Fairfax, Kirsten A.; Bolden, Jessica E.; McKenzie, Mark D.; Jarratt, Andrew; Hilton, Adrienne; Jackson, Jacob T.; Di Rago, Ladina; McCormack, Matthew P.; de Graaf, Carolyn A.; Stonehouse, Olivia; Taoudi, Samir; Alexander, Warren S.; Nutt, Stephen L.; Ritchie, Matthew E.; Ng, Ashley P.; Naik, Shalin H. Share Save
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Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia Bell, Charles C.; Fenne, Katie A.; Chan, Yih-Chih; Rambow, Florian; Yeung, Miriam M.; Vassiliadis, Dane; Lara, Luis; Yeh, Paul; Martelotto, Luciano G.; Rogiers, Aljosja; Kremer, Brandon E.; Barbash, Olena; Mohammad, Helai P.; Johanson, Timothy M.; Burr, Marian L.; Dhar, Arindam; Karpinich, Natalie; Tian, Luyi; Tyler, Dean S.; MacPherson, Laura; Shi, Junwei; Pinnawala, Nathan; Fong, Chun Yew; Papenfuss, Anthony T.; Grimmond, Sean M.; Dawson, Sarah-Jane; Allan, Rhys S.; Kruger, Ryan G.; Vakoc, Christopher R.; Goode, David L.; Naik, Shalin H.; Gilan, Omer; Lam, Enid Y. N.; Marine, Jean-Christophe; Prinjha, Rab K.; Dawson, Mark A. Share Save
Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments Tian, Luyi; Dong, Xueyi; Freytag, Saskia; Le Cao, Kim-Anh; Su, Shian; JalalAbadi, Abolfazl; Amann-Zalcenstein, Daniela; Weber, Tom S.; Seidi, Azadeh; Jabbari, Jafar S.; Naik, Shalin H.; Ritchie, Matthew E. Share Save
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