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Lennart Martens

vib

72H-index
547Paper Count
2.4WCitation Count
Published Papers 236
Publication Date
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Temporal and Functional Profiling of the Microbiome of High and Low Nitrogen Content Barley Seed in Silo Storage
errFood Science & Nutrition
IF3.8
err2026-08-21
err0
errOAAI
errKalonji A. Tshisekedi; Tim Van Den Bossche; Lennart Martens; Pieter De Maayer; Angela Botes
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The need for standardization and improved open (meta)data practices in metaproteomics
errMicrobiome
IF12.7
err2026-07-23
err0
errOAAI
errTim Van Den Bossche; Maximilian Wolf; Jean Armengaud; Magnus Ø. Arntzen; Dirk Benndorf; Daniel Figeys; Lucia Grenga; Robert L. Hettich; Nithu Sara John; Pratik Jagtap; Nico Jehmlich; Manuel Kleiner; Benoit J. Kunath; Leyuan Li; Mary Lipton; Bart Mesuere; Benjamin A. Neely; Zhibin Ning; Ane Laura Pedersen; Yasset Perez-Riverol; Jeena Rajan; Kay Schallert; Jana Seifert; Sergio Uzzau; Pieter Verschaffelt; Paul Wilmes; Juan Antonio Vizcaíno; Lennart Martens; Robert Heyer
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InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics
errNature Communications
IF15.7
err2026-07-10
err0
errOAAI
errJesper Lauridsen; Vahap Canbay; Rachel Catzel; Pathmanaban Ramasamy; Amandla Mabona; Kevin Eloff; Paul Fullwood; Jennifer Ferguson; Annekatrine Kirketerp-Møller; Ida Sofie Goldschmidt; Tine Claeys; Sam van Puyenbroeck; Nicolas Lopez Carranza; Erwin M. Schoof; Lennart Martens; Jeroen Van Goey; Chiara Francavilla; Timothy Patrick Jenkins; Konstantinos Kalogeropoulos
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errSave
omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation in bulk- and single-cell proteomics
errNature Communications
IF15.7
err2026-05-20
err0
errOAAI
errAlexandre Segers; Cristian Castiglione; Christophe Vanderaa; Lennart Martens; Davide Risso; Lieven Clement
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errSave
The Peptonizer2000: Bringing Confidence to Metaproteomics
errJournal of Proteome Research
IF3.6
err2026-03-03
err0
errOAAI
errTanja Holstein; Pieter Verschaffelt; Tim Van Den Bossche; Simon Van de Vyver; Lennart Martens; Bart Mesuere; Thilo Muth
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errSave
The Escherichia coli PeptideAtlas Build: Characterizing the Observed Escherichia coli Pan-Proteome and Its Post-Translational Modifications
errJournal of Proteome Research
IF3.6
err2026-01-22
err0
errOAAI
errCaroline Jachmann; Zhi Sun; Kevin Velghe; Florence Arsène-Ploetze; Aurélie Hirschler; Jasper Zuallaert; Christine Carapito; Robbin Bouwmeester; Kay Nieselt; Eric W. Deutsch; Lennart Martens; Ralf Gabriels; Tim Van Den Bossche
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Unlocking the Next Decade of Proteomics with Standardized; Structured Metadata
errJournal of Proteome Research
IF3.6
err2026-01-21
err0
errOAAI
errTim Van Den Bossche; Ananth Prakash; Tine Claeys; Juan Antonio Vizcaíno; Lennart Martens
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errSave
Large-scale proteomics profiling of peripheral blood of DM1 patients identifies biomarkers for disease severity and functional capacity
errJournal of Neuromuscular Diseases
IF3.4
err2026-01-16
err0
PREAI
errDaniël van As; Tine Claeys; Renee Salz; Delphi Van Haver; Sara Dufour; Amber van Deelen; Jolein Gloerich; Ralf Gabriels; Pieter Jan Volders; Vera Dobelmann; Andrea Gangfuss; Tobias Ruck; Genevieve Gourdon; Elise Duchesne; Cynthia Gagnon; Andreas Roos; Alain van Gool; Francis Impens; Lennart Martens; Hanns Lochmüller; Benedikt Schoser; Guillaume Bassez; Baziel GM van Engelen; Peter AC ‘t Hoen;
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errSave
Collisional Cross-Section Prediction for Multiconformational Peptide Ions with IM2Deep
errAnalytical Chemistry
IF6.7
err2025-07-08
err0
PREAI
errRobbe Devreese; Alireza Nameni; Arthur Declercq; Emmy Terryn; Ralf Gabriels; Francis Impens; Kris Gevaert; Lennart Martens; Robbin Bouwmeester
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errSave
msqrob2TMT: Robust Linear Mixed Models for Inferring Differential Abundant Proteins in Labeled Experiments With Arbitrarily Complex Design
errMolecular & Cellular Proteomics
IF5.5
err2025-07-01
err0
errOAAI
errStijn Vandenbulcke; Christophe Vanderaa; Oliver Crook; Lennart Martens; Lieven Clement
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errSave
MultiStageSearch: An Iterative Workflow for Unbiased Taxonomic Analysis of Pathogens Using Proteogenomics
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-05-19
err0
PREAI
errPipart, Julian; Holstein, Tanja; Martens, Lennart; Muth, Thilo
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Open-Source and FAIR Research Software for Proteomics
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-04-01
err0
errOAAI
errPerez-Riverol, Yasset; Bittremieux, Wout; Noble, William S.; Martens, Lennart; Bilbao, Aivett; Lazear, Michael R.; Gruening, Bjorn; Katz, Daniel S.; MacCoss, Michael J.; Dai, Chengxin; Eng, Jimmy K.; Bouwmeester, Robbin; Shortreed, Michael R.; Audain, Enrique; Sachsenberg, Timo; Van Goey, Jeroen; Wallmann, Georg; Wen, Bo; Kall, Lukas; Fondrie, William E.
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Maximizing Immunopeptidomics-Based Bacterial Epitope Discovery by Multiple Search Engines and Rescoring
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-03-01
err0
errOAAI
errWillems, Patrick; Thery, Fabien; Van Moortel, Laura; De Meyer, Margaux; Staes, An; Gul, Adillah; Kovalchuke, Lyudmila; Declercq, Arthur; Devreese, Robbe; Bouwmeester, Robbin; Gabriels, Ralf; Martens, Lennart; Impens, Francis
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PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2025-03-01
err0
errOAAI
errVande Moortele, Tibo; Verschaffelt, Pieter; Huang, Qingyao; Doncheva, Nadezhda T.; Holstein, Tanja; Jachmann, Caroline; Dawyndt, Peter; Martens, Lennart; Mesuere, Bart; van den Bossche, Tim
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TIMS2Rescore: A Data Dependent Acquisition-Parallel Accumulation and Serial Fragmentation-Optimized Data-Driven Rescoring Pipeline Based on MS2Rescore
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-02-06
err2
errOAAI
errDeclercq, Arthur; Devreese, Robbe; Scheid, Jonas; Jachmann, Caroline; van den Bossche, Tim; Preikschat, Annica; Gomez-Zepeda, David; Rijal, Jeewan Babu; Hirschler, Aurelie; Krieger, Jonathan R.; Srikumar, Tharan; Rosenberger, George; Martelli, Claudia; Trede, Dennis; Carapito, Christine; Tenzer, Stefan; Walz, Juliane S.; Degroeve, Sven; Bouwmeester, Robbin; Martens, Lennart; Gabriels, Ralf
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Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing
errPROTEOMICS
IF3.9
err2025-01-31
err1
PREAI
errvan den Bossche, Tim; Beslic, Denis; van Puyenbroeck, Sam; Suomi, Tomi; Holstein, Tanja; Martens, Lennart; Elo, Laura L.; Muth, Thilo
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Unipept in 2024: Expanding Metaproteomics Analysis with Support for Missed Cleavages and Semitryptic and Nontryptic Peptides
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-01-10
err1
PREAI
errVande Moortele, Tibo; Devlaminck, Bram; van de Vyver, Simon; van den Bossche, Tim; Martens, Lennart; Dawyndt, Peter; Mesuere, Bart; Verschaffelt, Pieter
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PTMVision: An Interactive Visualization Webserver for Post-translational Modifications of Proteins
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-01-08
err0
errOAAI
errHackl, Simon; Jachmann, Caroline; Paz, Mathias Witte; Harbig, Theresa Anisja; Martens, Lennart; Nieselt, Kay
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Predicting ion mobility collision cross sections and assessing prediction variation by combining conventional and data driven modeling
errTALANTA
IF6.1
err2024-07-01
err0
PREAI
errBouwmeester, Robbin; Richardson, Keith; Denny, Richard; Wilson, Ian D.; Degroeve, Sven; Martens, Lennart; Vissers, Johannes P. C.
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errSave
Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-04-26
err3
PREAI
errStaes, An; Maia, Teresa Mendes; Dufour, Sara; Bouwmeester, Robbin; Gabriels, Ralf; Martens, Lennart; Gevaert, Kris; Impens, Francis; Devos, Simon
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Matthias Mann
H-index: 250 · Papers: 1.4K
R
Ralph H. Hruban
H-index: 209 · Papers: 2.0K
R
Ruedi Aebersold
H-index: 198 · Papers: 1.2K
W
Willem M. de Vos
H-index: 193 · Papers: 1.3K
J
John R. Yates
H-index: 188 · Papers: 1.5K
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