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Yasubumi Sakakibara

school of frontier engineering

39H-index
213Paper Count
6.0KCitation Count
Published Papers 37
Publication Date
Genomic resources of Ascidiella aspersa and comparative analysis across tunicates reveal class-level features and evolutionary diversification
err2026-08-04
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errOAAI
errTakumi T. Shito; Vasanthan Jayakumar; Koki Nishitsuji; Yoshie Nishitsuji; Shimon Kawai; Shunsuke O. Miyasaka; Kotaro Oka; Yasubumi Sakakibara; Kohji Hotta
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Cross-species gene redesign leveraging ortholog information and generative modeling
err2026-03-03
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errOAAI
errManato Akiyama; Motohiko Tashiro; Ying Huang; Mika Uehara; Taiki Kanzaki; Mitsuhiro Itaya; Masakazu Kataoka; Kenji Miyamoto; Yasubumi Sakakibara
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Transcriptomic dynamics of petal development in the one-day flower species, Japanese morning glory (Ipomoea nil)
err2025-09-01
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PREAI
errNakagawa, Soya; Hoshino, Atsushi; Ito, Kazuyo; Nishide, Hiroyo; Shiratake, Katsuhiro; Nagano, Atsushi J.; Sakakibara, Yasubumi
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Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine
err2024-05-16
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errOAAI
errUehara, Mika; Inoue, Takashi; Hase, Sumitaka; Sasaki, Erika; Toyoda, Atsushi; Sakakibara, Yasubumi
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Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity
err2023-11-16
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errOAAI
errOchiai, Toshiki; Inukai, Tensei; Akiyama, Manato; Furui, Kairi; Ohue, Masahito; Matsumori, Nobuaki; Inuki, Shinsuke; Uesugi, Motonari; Sunazuka, Toshiaki; Kikuchi, Kazuya; Kakeya, Hideaki; Sakakibara, Yasubumi
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Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine
err2022-10-26
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errOAAI
errUehara, Mika; Inoue, Takashi; Kominato, Minori; Hase, Sumitaka; Sasaki, Erika; Toyoda, Atsushi; Sakakibara, Yasubumi
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Graph Kernels Encoding Features of All Subgraphs by Quantum Superposition
err2022-09-01
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errOAAI
errKishi, Kaito; Satoh, Takahiko; Raymond, Rudy; Yamamoto, Naoki; Sakakibara, Yasubumi
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Development and preliminary validation of a machine learning system for thyroid dysfunction diagnosis based on routine laboratory tests
err2022-01-19
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errOAAI
errHu, Min; Asami, Chikashi; Iwakura, Hiroshi; Nakajima, Yasuyo; Sema, Ryousuke; Kikuchi, Tsuyoshi; Miyata, Tsuyoshi; Sakamaki, Koji; Kudo, Takumi; Yamada, Masanobu; Akamizu, Takashi; Sakakibara, Yasubumi
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AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity
err2022-01-01
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PREAI
errMaki, Jumpei; Oshimura, Asami; Tsukano, Chihiro; Yanagita, Ryo C.; Saito, Yutaka; Sakakibara, Yasubumi; Irie, Kazuhiro
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A Max-Margin Model for Predicting Residue-Base Contacts in Protein-RNA Interactions
err2021-10-25
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errOAAI
errKashiwagi, Shunya; Sato, Kengo; Sakakibara, Yasubumi
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Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation
err2021-02-15
err32
errOAAI
errIshino, Kyoko; Hasuwa, Hidetoshi; Yoshimura, Jun; Iwasaki, Yuka W.; Nishihara, Hidenori; Seki, Naomi M.; Hirano, Takamasa; Tsuchiya, Marie; Ishizaki, Hinako; Masuda, Harumi; Kuramoto, Tae; Saito, Kuniaki; Sakakibara, Yasubumi; Toyoda, Atsushi; Itoh, Takehiko; Siomi, Mikiko C.; Morishita, Shinichi; Siomi, Haruhiko
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RNA secondary structure prediction using deep learning with thermodynamic integration
err2021-02-11
err199
errOAAI
errSato, Kengo; Akiyama, Manato; Sakakibara, Yasubumi
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An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data
err2020-04-02
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errOAAI
errJayakumar, Vasanthan; Ishii, Hiromi; Seki, Misato; Kumita, Wakako; Inoue, Takashi; Hase, Sumitaka; Sato, Kengo; Okano, Hideyuki; Sasaki, Erika; Sakakibara, Yasubumi
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Efficient generation of Knock-in/Knock-out marmoset embryo via CRISPR/Cas9 gene editing
err2019-09-03
err44
errOAAI
errKumita, Wakako; Sato, Kenya; Suzuki, Yasuhiro; Kurotaki, Yoko; Harada, Takeshi; Zhou, Yang; Kishi, Noriyuki; Sato, Kengo; Aiba, Atsu; Sakakibara, Yasubumi; Feng, Guoping; Okano, Hideyuki; Sasaki, Erika
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Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model
err2018-08-29
err10
errOAAI
errAoto, Yoshimasa; Okumura, Kazuhiro; Hachiya, Tsuyoshi; Hase, Sumitaka; Wakabayashi, Yuichi; Ishikawa, Fuyuki; Sakakibara, Yasubumi
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