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Spike-in enhanced phosphoproteomics uncovers synergistic signaling responses to MEK inhibition in colon cancer cells van Bentum, Mirjam; Klinger, Bertram; Sieber, Anja; Naghiloo, Sheyda; Zauber, Henrik; Lehmann, Nadine; Haji, Mohamed; Niquet, Sylvia; Mertins, Philipp; Bluethgen, Nils; Selbach, Matthias Share Save
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High-confidence calling of normal epithelial cells allows identification of a novel stem-like cell state in the colorectal cancer microenvironment Wei, Tzu-Ting; Blanc, Eric; Peidli, Stefan; Bischoff, Philip; Trinks, Alexandra; Horst, David; Sers, Christine; Bluethgen, Nils; Beule, Dieter; Morkel, Markus; Obermayer, Benedikt Share Save
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scPerturb: harmonized single-cell perturbation data Peidli, Stefan; Green, Tessa D.; Shen, Ciyue; Gross, Torsten; Min, Joseph; Garda, Samuele; Yuan, Bo; Schumacher, Linus J.; Taylor-King, Jake P.; Marks, Debora S.; Luna, Augustin; Bluethgen, Nils; Sander, Chris Share Save
Combination of tumor asphericity and an extracellular matrix-related prognostic gene signature in non-small cell lung cancer patients Zschaeck, Sebastian; Klinger, Bertram; van den Hoff, Joerg; Cegla, Paulina; Apostolova, Ivayla; Kreissl, Michael C.; Cholewinski, Witold; Kukuk, Emily; Strobel, Helen; Amthauer, Holger; Bluethgen, Nils; Zips, Daniel; Hofheinz, Frank Share Save
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Oncogenic signaling is coupled to colorectal cancer cell differentiation state Sell, Thomas; Klotz, Christian; Fischer, Matthias M.; Astaburuaga-Garcia, Rosario; Krug, Susanne; Drost, Jarno; Clevers, Hans; Sers, Christine; Morkel, Markus; Bluethgen, Nils Share Save
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Single-cell gene regulatory network prediction by explainable AI Keyl, Philipp; Bischoff, Philip; Dernbach, Gabriel; Bockmayr, Michael; Fritz, Rebecca; Horst, David; Bluethgen, Nils; Montavon, Gregoire; Mueller, Klaus-Robert; Klauschen, Frederick Share Save
Identification of an FXR-modulated liver-intestine hybrid state in iPSC-derived hepatocyte-like cells Nell, Patrick; Kattler, Kathrin; Feuerborn, David; Hellwig, Birte; Rieck, Adrian; Salhab, Abdulrahman; Lepikhov, Konstantin; Gasparoni, Gilles; Thomitzek, Antonia; Belgasmi, Katharina; Bluethgen, Nils; Morkel, Markus; Kueppers-Munther, Barbara; Godoy, Patricio; Hay, David C.; Cadenas, Cristina; Marchan, Rosemarie; Vartak, Nachiket; Edlund, Karolina; Rahnenfuehrer, Joerg; Walter, Joern; Hengstler, Jan G. Share Save
High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation Seidel, Florian; Cherianidou, Anna; Kappenberg, Franziska; Marta, Miriam; Dreser, Nadine; Blum, Jonathan; Waldmann, Tanja; Bluthgen, Nils; Meisig, Johannes; Madjar, Katrin; Henry, Margit; Rotshteyn, Tamara; Scholtz-Illigens, Andreas; Marchan, Rosemarie; Edlund, Karolina; Leist, Marcel; Rahnenfuehrer, Joerg; Sachinidis, Agapios; Hengstler, Jan Georg Share Save
Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis Aguilar, Carmen; Pauzuolis, Mindaugas; Pompaiah, Malvika; Vafadarnejad, Ehsan; Arampatzi, Panagiota; Fischer, Mara; Narres, Dominik; Neyazi, Mastura; Kayisoglu, Ozge; Sell, Thomas; Bluethgen, Nils; Morkel, Markus; Wiegering, Armin; Germer, Christoph-Thomas; Kircher, Stefan; Rosenwald, Andreas; Saliba, Antoine-Emmanuel; Bartfeld, Sina Share Save
Mutations in ALK signaling pathways conferring resistance to ALK inhibitor treatment lead to collateral vulnerabilities in neuroblastoma cells Berlak, Mareike; Tucker, Elizabeth; Dorel, Mathurin; Winkler, Annika; McGearey, Aleixandria; Rodriguez-Fos, Elias; da Costa, Barbara Martins; Barker, Karen; Fyle, Elicia; Calton, Elizabeth; Eising, Selma; Ober, Kim; Hughes, Deborah; Koutroumanidou, Eleni; Carter, Paul; Stankunaite, Reda; Proszek, Paula; Jain, Neha; Rosswog, Carolina; Dorado-Garcia, Heathcliff; Molenaar, Jan Jasper; Hubank, Mike; Barone, Giuseppe; Anderson, John; Lang, Peter; Deubzer, Hedwig Elisabeth; Kuenkele, Annette; Fischer, Matthias; Eggert, Angelika; Kloft, Charlotte; Henssen, Anton George; Boettcher, Michael; Hertwig, Falk; Bluthgen, Nils; Chesler, Louis; Schulte, Johannes Hubertus Share Save
A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data Neumann, Manuel; Xu, Xiaocai; Smaczniak, Cezary; Schumacher, Julia; Yan, Wenhao; Bluethgen, Nils; Greb, Thomas; Joensson, Henrik; Traas, Jan; Kaufmann, Kerstin; Muino, Jose M. Share Save
Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics Wyler, Emanuel; Adler, Julia M.; Eschke, Kathrin; Alves, G. Teixeira; Peidli, Stefan; Pott, Fabian; Kazmierski, Julia; Michalick, Laura; Kershaw, Olivia; Bushe, Judith; Andreotti, Sandro; Pennitz, Peter; Abdelgawad, Azza; Postmus, Dylan; Goffinet, Christine; Kreye, Jakob; Reincke, S. Momsen; Pruess, Harald; Bluethgen, Nils; Gruber, Achim D.; Kuebler, Wolfgang M.; Witzenrath, Martin; Landthaler, Markus; Nouailles, Geraldine; Trimpert, Jakob Share Save
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