Not logged in LinkML: an open data modeling framework Moxon, Sierra A. T.; Solbrig, Harold; Harris, Nomi L.; Kalita, Patrick; Miller, Mark A.; Patil, Sujay; Schaper, Kevin; Bizon, Chris; Caufield, J. Harry; Cuesta, Silvano Cirujano; Cox, Corey; Dekervel, Frank; Dooley, Damion M.; Duncan, William D.; Fliss, Tim; Gehrke, Sarah; Graefe, Adam S. L.; Hegde, Harshad; Ireland, A. J.; Jacobsen, Julius O. B.; Krishnamurthy, Madan; Kroll, Carlo; Linke, David; Ly, Ryan; Matentzoglu, Nicolas; Overton, James A.; Saunders, Jonny L.; Unni, Deepak R.; Vaidya, Gaurav; Vierdag, Wouter-Michiel A. M.; Ruebel, Oliver; Chute, Christopher G.; Brush, Matthew H.; Haendel, Melissa A.; Mungall, Christopher J. Share Save
The Mpox contextual data specification package: a data curation toolkit to support collaborative pathogen genomic surveillance Griffiths, Emma J.; Cameron, Rhiannon; Barclay, Charlotte; John, Nithu Sara; Dooley, Damion; Gill, Ivan; Iseminger, Madeline; Anwar, Muhammad Zohaib; Horsman, Mark E.; Mackenzie, Keith; Prystajecky, Natalie; Tyson, John; Jassem, Agatha; Lee, Tracy; Azana, Rob; Fung, Janet; Chan, Michael; Cheung, Branco; Tsang, Frankie; Fornika, Dan; Caleta, Jessica M.; Newman, Tara; Russell, Shannon L.; Zlosnik, James E. A.; Hoang, Linda; Knox, Natalie; Tyler, Andrea D.; Haidl, Emily; Yadav, Chanchal; Duggan, Ana T.; Kearney, Levon; Townend, Christopher; Cruz, Bernadette; Van Domselaar, Gary; Hsiao, William W. L. Share Save
VIRUS-MVP: a framework for comprehensive surveillance of viral mutations and their functional impacts Anwar, Muhammad Zohaib; Gill, Ivan S.; Iseminger, Madeline; Sehar, Anoosha; Griffiths, Emma J.; Dooley, Damion; Duan, Jun; Vora, Khushi; Van Domselaar, Gary; Brinkman, Fiona S. L.; Gordon, Paul M. K.; Hsiao, William W. L. Share Save
Food process ontology requirements Dooley, Damion; Weber, Magalie; Ibanescu, Liliana; Lange, Matthew; Chan, Lauren; Soldatova, Larisa; Yang, Chen; Warren, Robert; Shimizu, Cogan; Mcginty, Hande K.; Hsiao, William; Wallace, Evan Share Save
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OBO Foundry food ontology interconnectivity Dooley, Damion; Andres-Hernandez, Liliana; Bordea, Georgeta; Carmodyd, Leigh; Cavalieri, Duccio; Chan, Lauren; Castellano-Escuder, Pol; Mougin, Carl Lachath Fleur; Mougin, Fleur; Vitali, Francesco; Yang, Chen; Weber, Magalie; Mcginty, Hande Kucuk; Lange, Matthew Share Save
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training Griffiths, Emma J.; Mendes, Ines; Maguire, Finlay; Guthrie, Jennifer L.; Wee, Bryan A.; Schmedes, Sarah; Holt, Kathryn; Yadav, Chanchal; Cameron, Rhiannon; Barclay, Charlotte; Dooley, Damion; Maccannell, Duncan; Chindelevitch, Leonid; Mizrachi, Ilene Karsch-; Waheed, Zahra; Katz, Lee; Petit, Robert, III; Dave, Mugdha; Oluniyi, Paul; Nasar, Muhammad Ibtisam; Raphenya, Amogelang; Hsiao, William W. L.; Timme, Ruth E. Share Save
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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database Alcock, Brian P.; Huynh, William; Chalil, Romeo; Smith, Keaton W.; Raphenya, Amogelang R.; Wlodarski, Mateusz A.; Edalatmand, Arman; Petkau, Aaron; Syed, Sohaib A.; Tsang, Kara K.; Baker, Sheridan J. C.; Dave, Mugdha; McCarthy, Madeline C.; Mukiri, Karyn M.; Nasir, Jalees A.; Golbon, Bahar; Imtiaz, Hamna; Jiang, Xingjian; Kaur, Komal; Kwong, Megan; Liang, Zi Cheng; Niu, Keyu C.; Shan, Prabakar; Yang, Jasmine Y. J.; Gray, Kristen L.; Hoad, Gemma R.; Jia, Baofeng; Bhando, Timsy; Carfrae, Lindsey A.; Farha, Maya A.; French, Shawn; Gordzevich, Rodion; Rachwalski, Kenneth; Tu, Megan M.; Bordeleau, Emily; Dooley, Damion; Griffiths, Emma; Zubyk, Haley L.; Brown, Eric D.; Maguire, Finlay; Beiko, Robert G.; Hsiao, William W. L.; Brinkman, Fiona S. L.; Van Domselaar, Gary; McArthur, Andrew G. Share Save
Establishing a Common Nutritional Vocabulary-From Food Production to Diet Andres-Hernandez, Liliana; Blumberg, Kai; Walls, Ramona L.; Dooley, Damion; Mauleon, Ramil; Lange, Matthew; Weber, Magalie; Chan, Lauren; Malik, Adnan; Moller, Anders; Ireland, Jayne; Segovia, Lucia; Zhang, Xuhuiqun; Burton-Freeman, Britt; Magelli, Paul; Schriever, Andrew; Forester, Shavawn M.; Liu, Lei; King, Graham J. Share Save
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Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil-Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch-Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R. Share Save
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies Jackson, Rebecca; Matentzoglu, Nicolas; Overton, James A.; Vita, Randi; Balhoff, James P.; Buttigieg, Pier Luigi; Carbon, Seth; Courtot, Melanie; Diehl, Alexander D.; Dooley, Damion M.; Duncan, William D.; Harris, Nomi L.; Haendel, Melissa A.; Lewis, Suzanna E.; Natale, Darren A.; Osumi-Sutherland, David; Ruttenberg, Alan; Schriml, Lynn M.; Smith, Barry; Stoeckert, Christian J., Jr.; Vasilevsky, Nicole A.; Walls, Ramona L.; Zheng, Jie; Mungall, Christopher J.; Peters, Bjoern Share Save
Standardization of assay representation in the Ontology for Biomedical Investigations Vita, Randi; Zheng, Jie; Jackson, Rebecca; Dooley, Damion; Overton, James A.; Miller, Mark A.; Berrios, Daniel C.; Scheuermann, Richard H.; He, Yongqun; McGinty, Hande Kucuk; Brochhausen, Mathias; Lin, Aisyah Yu; Jain, Sagar B.; Chibucos, Marcus C.; Judkins, John; Giglio, Michelle G.; Feng, Irene Y.; Burns, Gully; Brush, Matthew H.; Peters, Bjoern; Stoeckert, Christian J., Jr. Share Save
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database Alcock, Brian P.; Raphenya, Amogelang R.; Lau, Tammy T. Y.; Tsang, Kara K.; Bouchard, Megane; Edalatmand, Arman; Huynh, William; Nguyen, Anna-Lisa, V; Cheng, Annie A.; Liu, Sihan; Min, Sally Y.; Miroshnichenko, Anatoly; Tran, Hiu-Ki; Werfalli, Rafik E.; Nasir, Jalees A.; Oloni, Martins; Speicher, David J.; Florescu, Alexandra; Singh, Bhavya; Faltyn, Mateusz; Hernandez-Koutoucheva, Anastasia; Sharma, Arjun N.; Bordeleau, Emily; Pawlowski, Andrew C.; Zubyk, Haley L.; Dooley, Damion; Griffiths, Emma; Maguire, Finlay; Winsor, Geoff L.; Beiko, Robert G.; Brinkman, Fiona S. L.; Hsiao, William W. L.; Domselaar, Gary, V; McArthur, Andrew G. Share Save
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration Dooley, Damion M.; Griffiths, Emma J.; Gosal, Gurinder S.; Buttigieg, Pier L.; Hoehndorf, Robert; Lange, Matthew C.; Schriml, Lynn M.; Brinkman, Fiona S. L.; Hsiao, William W. L. Share Save
Human Activity Determines the Presence of Integron-Associated and Antibiotic Resistance Genes in Southwestern British Columbia Uyaguari-Diaz, Miguel I.; Croxen, Matthew A.; Luo, Zhiyao; Cronin, Kirby I.; Chan, Michael; Baticados, Waren N.; Nesbitt, Matthew J.; Li, Shaorong; Miller, Kristina M.; Dooley, Damion; Hsiao, William; Isaac-Renton, Judith L.; Tang, Patrick; Prystajecky, Natalie Share Save
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