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J

Jake Y. Chen

the university of alabama at birmingham

55H-index
423Paper Count
1.9WCitation Count
Published Papers 106
Publication Date
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A genome-scale CRISPRi perturbation atlas of human induced pluripotent stem cells
errNature Biotechnology
IF41.7
err2026-07-01
err0
PREAI
errSami Nourreddine; Yesh Doctor; Amir Dailamy; Yi-Hung Lee; Jan N. Hansen; Rebecca Chinn; Antoine Forget; Benjamin Polacco; Monita Muralidharan; Alina Sigaeva; Sushant Sunder; Emily Pan; Jiahao Gao; Jake Y. Chen; Timothy Clark; Jillian Parker; Kirsten Obernier; Christian Metallo; Trey Ideker; Emma Lundberg; Nevan Krogan; Prashant Mali
errShare
errSave
GOLDEN fusion: a graph-oriented learning with domain-embedding network fusion for generating super gene sets in functional genomics
errBriefings in Bioinformatics
IF7.7
err2026-05-25
err0
errOAAI
errQi Li; Cody Nichols; Robert S Welner; Jake Y Chen; Wei-Shinn Ku; Zongliang Yue
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errSave
Design, synthesis and evaluation of novel BRD4 and RIPK3 dual inhibitors as potential anti-inflammatory agents and antidotes for arsenicals
errBIOORGANIC & MEDICINAL CHEMISTRY LETTERS
IF2.2
err2026-04-09
err0
PREAI
errOmar Moukha-Chafiq; Marina Fosso Yatchang; Kaitlyn Houghtling; Dahlia Cantor; John P. Tillotson; Sarath C. Sarngadharan; Fuad Al Abir; Jake Y. Chen; Sixue Zhang; Ling Zhai; Paige Vinson; Anupam Agarwal; Mohammad Athar; Corinne E. Augelli-Szafran
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errSave
Research Code Sharing in Support of Gold Standard Science
errJournal of Diabetes Science and Technology
IF3.7
err2026-01-14
err0
PREAI
errDavid C. Klonoff; Juan Espinoza; Julia K. Mader; Lutz Heinemann; Claudio Cobelli; David Kerr; Boris Kovatchev; Bijan Najafi; Priya Prahalad; Yaguang Zheng; Mandy M. Shao; Agatha F. Scheideman; Ashley Y. DuNova; Michael Kohn; Guillermo E. Umpierrez; Tien Y. Wong; Aiman Abdel Malek; Michael S. D. Agus; David T. Ahn; Rawan AlSaad; Mohammed E. Al-Sofiani; David Armstrong; Mark A. Arnold; Yong Mong Bee; B. Wayne Bequette; Riccardo Bellazzi; Eda Cengiz; J. Geoffrey Chase; Haipeng Chen; Jake Y. Chen; Simon L. Cichosz; Ali Cinar; Mark A. Clements; Kelly L. Close; Jorge Cuadros; Ivan Contreras; Gora Datta; Ketan Dhatariya; Francis J. Doyle; Andjela Drincic; Andrea Facchinetti; G. Alexander Fleming; Joshua Foreman; Monica A. L. Gabbay; Ricardo Gutierrez-Osuna; Elizabeth Healey; Thanh D. Hoang; Peter G. Jacobs; Bernhard Kulzer; Jeff La Belle; Aaron Y. Lee; Cecilia S. Lee; Wei-An Lee; Dorian Liepmann; David Maahs; Nestoras Mathioudakis; Sultan A. Meo; Ahmed A. Metwally; Shivani Misra; Viswanathan Mohan; Sun-Joon Moon; Helge Raeder; Connie Rhee; Eun-Jung Rhee; David Scheinker; Viral N. Shah; Bin Sheng; Michael P. Snyder; Koji Sode; Elias K. Spanakis; Jannet Svensson; Nitin Vaswani; Maryam Vareth; Josep Vehi; Amisha Wallia; Kayo Waki; Tao Wang; Eric Williams; Risa M. Wolf; Jenise C. Wong; Sewagegn Yeshiwas; Mihail Zilbermint; Shahid N. Shah
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errSave
GETgene-AI: a framework for prioritizing actionable cancer drug targets
errFRONTIERS IN SYSTEMS BIOLOGY
IF0
err2025-09-29
err0
errOAAI
errGu, Adrian; Chen, Jake Y.
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errSave
Targeting west nile virus replication by xanthine inhibitors
errMedicinal Chemistry Research
IF3.1
err2025-09-26
err0
PREAI
errTheresa H. Nguyen; Jessica L. Smith; Shuklendu D. Karyakarte; John P. Tillotson; Sarath C. Sarngadharan; Fuad Al Abir; Jake Y. Chen; Sixue Zhang; Lynn Rasmussen; Robert Bostwick; Alec J. Hirsch; Corinne E. Augelli-Szafran; Ashish K. Pathak; Omar Moukha-Chafiq
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errSave
NeSyDPP-4: discovering DPP-4 inhibitors for diabetes treatment with a neuro-symbolic AI approach
errFrontiers in Bioinformatics
IF3.9
err2025-08-21
err0
errOAAI
errDelower Hossain; Ehsan Saghapour; Jake Y. Chen
errShare
errSave
Temporal GeneTerrain: advancing precision medicine through dynamic gene expression visualization
errFrontiers in Bioinformatics
IF3.9
err2025-08-21
err0
errOAAI
errEhsan Saghapour; Rahul Sharma; Delower Hossain; Kevin Song; Zhandos Sembay; Jake Y. Chen
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errSave
High-throughput screening for the identification of dual inhibitors of BRD4 and RIPK3 toward the development of small-molecule medical countermeasure agents against arsenicals
errSLAS Discovery
IF2.7
err2025-07-02
err0
errOAAI
errMarina Fosso Yatchang; Ling Zhai; Omar Moukha-Chafiq; Bini Mathew; Fuad Al Abir; Sixue Zhang; Pedro Ruiz; Sara McKellip; Miranda Nebane; Jake Y. Chen; Anupam Agarwal; James R. Bostwick; Mark J. Suto; Mohammad Athar; Corinne E. Augelli-Szafran
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errSave
ZDHHC9-Mediated PKG1 Affects Osteogenesis by Regulating MAMs in T2DM
errJOURNAL OF DENTAL RESEARCH
IF5.9
err2025-03-18
err0
PREAI
errLi, B. Y.; Ma, G. Q.; Gui, H. D.; Zhou, S. J.; Liu, Y. X.; Wu, A. L.; He, Q. X.; Chen, J. Y.; Diao, J. Y.; Wu, D. N.; Xu, X.; Zhang, D. J.
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errSave
Improved energy storage properties in Pb 0.82 La 0.12 (Zr x Ti 1-x )O 3 antiferroelectric films with different Zr/Ti ratios
errJOURNAL OF POWER SOURCES
IF7.9
err2025-02-01
err0
PREAI
errWang, X. W.; Hou, M. Z.; Yang, F.; Fu, Y. X.; Li, X. F.; Chen, J. Y.; Yu, K. X.; Shao, D. H.
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errSave
Guest Editorial Selected Papers From BIOKDD 2022
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2024-09-01
err0
PREAI
errYan, Da; Pesquita, Catia; Gorg, Carsten; Chen, Jake Y.
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errSave
Comparison and optimization of biomass-derived hard carbon as anode materials for sodium-ion batteries
errCHEMICAL PHYSICS LETTERS
IF3.1
err2024-05-01
err3
PREAI
errKuai, J.; Xie, J.; Wang, J. D.; Chen, J. Y.; Liu, F.; Xu, X. W.; Tu, J.; Cheng, J. P.
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errSave
Photo- neuro- immuno- endocrinology: How the ultraviolet radiation regulates the body, brain, and immune system
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-03-15
err37
errOAAI
errSlominski, Radomir M.; Chen, Jake Y.; Raman, Chander; Slominski, Andrzej T.
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errSave
Pharmacogenomics of intravenous immunoglobulin response in Kawasaki disease
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-01-08
err2
errOAAI
errShrestha, Sadeep; Wiener, Howard W.; Kajimoto, Hidemi; Srinivasasainagendra, Vinodh; Ledee, Dolena; Chowdhury, Sabrina; Cui, Jinhong; Chen, Jake Y.; Beckley, Mikayla A.; Padilla, Luz A.; Dahdah, Nagib; Tiwari, Hemant K.; Portman, Michael A.
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Anlotinib plus chemotherapy as first-line therapy for gastrointestinal tumor patients with unresectable liver metastasis: Updated results from a multi-cohort, multicenter phase II trial ALTER-G-001-cohort C
errANNALS OF ONCOLOGY
IF65.4
err2023-11-01
err0
PREAI
errWu, J.; Zhou, C.; Yan, J.; Han, Z.; Wang, C.; Qin, Z.; Jiang, J.; Wang, C.; Tang, X.; Zhu, L.; Chen, J.; Mao, Y.; Wei, X.; Shangguan, C.; Zhang, J.
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errSave
Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based tools
errSCIENTIFIC REPORTS
IF3.9
err2023-04-26
err8
errOAAI
errNguyen, Thanh; Wei, Yuhua; Nakada, Yuji; Chen, Jake Y. Y.; Zhou, Yang; Walcott, Gregory; Zhang, Jianyi
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errSave
How cancer hijacks the body?s homeostasis through the neuroendocrine system
errTRENDS IN NEUROSCIENCES
IF15.1
err2023-04-01
err73
errOAAI
errSlominski, Radomir M.; Raman, Chander; Chen, Jake Y.; Slominski, Andrzej T.
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errSave
AdipoRon accelerates bone repair of calvarial defect in diet-induced obesity mice
errHELIYON
IF3.6
err2023-03-01
err4
errOAAI
errWu, Xingwen; Zhu, Danting; Shi, Le; Tu, Qisheng; Yu, Youcheng; Chen, Jake
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errSave
Construction of ceRNA and m6A-related lncRNA networks associated with anti-inflammation of AdipoAI
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2023-01-10
err2
errOAAI
errYu, Hongwen; Wu, Hongle; Xie, Qiuyan; Liu, Zining; Chen, Zehao; Tu, Qisheng; Chen, Jake; Fang, Fuchun; Qiu, Wei
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Róbert Langer
H-index: 262 · Papers: 2.0K
M
M Snyder
H-index: 210 · Papers: 3.3K
T
Tien Yin Wong
H-index: 208 · Papers: 3.1K
J
John Hardy
H-index: 207 · Papers: 1.9K
D
David L. Kaplan
H-index: 194 · Papers: 2.4K
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