Jonathan A. Eisen - Publications, H-index & Citations

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Jonathan A. Eisen

university of california davis

121H-index

891Paper Count

8.4WCitation Count

Published Papers 109

Publication Date

Skin microbiomes of frogs vary among body regions, revealing differences that reflect known patterns of chytrid infection

FRONTIERS IN MICROBIOLOGY

IF4.5

2025-05-13

OAAI

Ghose, Sonia L.; Eisen, Jonathan A.

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Nutritional niches of potentially endemic, facultatively anaerobic heterotrophs from an isolated Antarctic terrestrial hydrothermal refugium elucidated through metagenomics

ENVIRONMENTAL MICROBIOME

IF5.4

2024-12-18

OAAI

Herbold, Craig W.; Noell, Stephen E.; Lee, Charles K.; Vickers, Chelsea J.; Stott, Matthew B.; Eisen, Jonathan A.; Mcdonald, Ian R.; Cary, S. Craig

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Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives (vol 9, 000971, 2023)

MICROBIAL GENOMICS

IF4

2024-02-09

OAAI

Leon, Marina Estella De; Wilson, Harriet S.; Jospin, Guillaume; Eisen, Jonathan A.

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Characterization of the microbiome and volatile compounds in anal gland secretions from domestic cats (Felis catus) using metagenomics and metabolomics

SCIENTIFIC REPORTS

IF3.9

2023-11-08

OAAI

Rojas, Connie A.; Marks, Stanley L.; Borras, Eva; Lesea, Hira; McCartney, Mitchell M.; Coil, David A.; Davis, Cristina E.; Eisen, Jonathan A.

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Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina) (vol 9, pg 1207, 2023)

NATURE PLANTS

IF13.6

2023-08-07

OAAI

Yu, Lei; Khachaturyan, Marina; Matschiner, Michael; Healey, Adam; Bauer, Diane; Cameron, Brenda; Cusson, Mathieu; Duffy, J. Emmett; Fodrie, F. Joel; Gill, Diana; Grimwood, Jane; Hori, Masakazu; Hovel, Kevin; Hughes, A. Randall; Jahnke, Marlene; Jenkins, Jerry; Keymanesh, Keykhosrow; Kruschel, Claudia; Mamidi, Sujan; Menning, Damian M. M.; Moksnes, Per-Olav; Nakaoka, Masahiro; Pennacchio, Christa; Reiss, Katrin; Rossi, Francesca; Ruesink, Jennifer L. L.; Schultz, Stewart T. T.; Talbot, Sandra; Unsworth, Richard; Ward, David H. H.; Dagan, Tal; Schmutz, Jeremy; Eisen, Jonathan A.; Stachowicz, John J.; Van de Peer, Yves; Olsen, Jeanine L.; Reusch, Thorsten B. H.

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Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina)

NATURE PLANTS

IF13.6

2023-07-20

OAAI

Yu, Lei; Khachaturyan, Marina; Matschiner, Michael; Healey, Adam; Bauer, Diane; Cameron, Brenda; Cusson, Mathieu; Duffy, J. Emmett; Fodrie, F. Joel; Gill, Diana; Grimwood, Jane; Hori, Masakazu; Hovel, Kevin; Hughes, A. Randall; Jahnke, Marlene; Jenkins, Jerry; Keymanesh, Keykhosrow; Kruschel, Claudia; Mamidi, Sujan; Menning, Damian M.; Moksnes, Per-Olav; Nakaoka, Masahiro; Pennacchio, Christa; Reiss, Katrin; Rossi, Francesca; Ruesink, Jennifer L.; Schultz, Stewart T.; Talbot, Sandra; Unsworth, Richard; Ward, David H.; Dagan, Tal; Schmutz, Jeremy; Eisen, Jonathan A.; Stachowicz, John J.; van de Peer, Yves; Olsen, Jeanine L.; Reusch, Thorsten B. H.

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Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein- producing bacteria and non- violacein-producing close relatives

MICROBIAL GENOMICS

IF4

2023-04-13

OAAI

Leon, Marina Estella De; Wilson, Harriet S.; Jospin, Guillaume; Eisen, Jonathan A.

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Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study

MSYSTEMS

IF4.6

2023-02-23

OAAI

Rojas, Connie A.; Holekamp, Kay E.; Jasso, Mariette Viladomat; Souza, Valeria; Eisen, Jonathan A.; Theis, Kevin R.

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Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis

JOURNAL FOR IMMUNOTHERAPY OF CANCER

IF10.6

2023-01-04

OAAI

Perry, Lauren M.; Cruz, Sylvia M.; Kleber, Kara T.; Judge, Sean J.; Darrow, Morgan A.; Jones, Louis B.; Basmaci, Ugur N.; Joshi, Nikhil; Settles, Matthew L.; Durbin-Johnson, Blythe P.; Gingrich, Alicia A.; Monjazeb, Arta Monir; Carr-Ascher, Janai; Thorpe, Steve W.; Murphy, William J.; Eisen, Jonathan A.; Canter, Robert J.

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SARS-CoV-2 RNA Is Readily Detectable at Least 8 Months after Shedding in an Isolation Facility

MSPHERE

IF3.1

2022-12-21

OAAI

Coil, David A.; Pechacek, Randi; Kaze, Mo; Zuniga-Montanez, Rogelio; Guerrero, Roque G.; Eisen, Jonathan A.; Shapiro, Karen; Bischel, Heather N.

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Using the canine microbiome to bridge translation of cancer immunotherapy from pre-clinical murine models to human clinical trials

FRONTIERS IN IMMUNOLOGY

IF5.9

2022-08-12

OAAI

Kleber, Kara T. T.; Iranpur, Khurshid R. R.; Perry, Lauren M. M.; Cruz, Sylvia M. M.; Razmara, Aryana M. M.; Culp, William T. N.; Kent, Michael S. S.; Eisen, Jonathan A. A.; Rebhun, Robert B. B.; Canter, Robert J. J.

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The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs

COMMUNICATIONS BIOLOGY

IF5.1

2022-07-30

OAAI

Clever, Friederike; Sourisse, Jade M.; Preziosi, Richard F.; Eisen, Jonathan A.; Guerra, E. Catalina Rodriguez; Scott, Jarrod J.; Wilkins, Laetitia G. E.; Altieri, Andrew H.; McMillan, W. Owen; Leray, Matthieu

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Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity

ISME JOURNAL

IF10

2022-04-22

OAAI

Wilbanks, Elizabeth G.; Dore, Hugo; Ashby, Meredith H.; Heiner, Cheryl; Roberts, Richard J.; Eisen, Jonathan A.

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Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-07-16

OAAI

Osvatic, Jay T.; Wilkins, Laetitia G. E.; Leibrecht, Lukas; Leray, Matthieu; Zauner, Sarah; Polzin, Julia; Camacho, Yolanda; Gros, Olivier; Gils, Jan A. van; Eisen, Jonathan A.; Petersen, Jillian M.; Yuen, Benedict

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Global Diversity and Biogeography of the Zostera marina Mycobiome

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-05-26

OAAI

Ettinger, Cassandra L.; Vann, Laura E.; Eisen, Jonathan A.

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Air versus Water Chilling of Chicken: a Pilot Study of Quality, Shelf-Life, Microbial Ecology, and Economics

MSYSTEMS

IF4.6

2021-04-27

OAAI

Belk, Aeriel D.; Duarte, Toni; Quinn, Casey; Coil, David A.; Belk, Keith E.; Eisen, Jonathan A.; Quinn, Jason C.; Martin, Jennifer N.; Yang, Xiang; Metcalf, Jessica L.

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Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-11-06

OAAI

Furrow, Robert E.; Kim, Hyunsoo G.; Abdelrazek, Samah M. R.; Dahlhausen, Katherine; Yao, Andrew I.; Eisen, Jonathan A.; Goldman, Mark S.; Albeck, John G.; Facciotti, Marc T.

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Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-08-17

OAAI

Beam, Jacob P.; Becraft, Eric D.; Brown, Julia M.; Schulz, Frederik; Jarett, Jessica K.; Bezuidt, Oliver; Poulton, Nicole J.; Clark, Kayla; Dunfield, Peter F.; Ravin, Nikolai V.; Spear, John R.; Hedlund, Brian P.; Kormas, Konstantinos A.; Sievert, Stefan M.; Elshahed, Mostafa S.; Barton, Hazel A.; Stott, Matthew B.; Eisen, Jonathan A.; Moser, Duane P.; Onstott, Tullis C.; Woyke, Tanja; Stepanauskas, Ramunas

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Reply to McDonald, Protections against the Risk of Airborne SARS-CoV-2 Infection

MSYSTEMS

IF4.6

2020-06-30

OAAI

Dietz, Leslie; Horve, Patrick F.; Coil, David A.; Fretz, Mark; Eisen, Jonathan A.; Wymelenberg, Kevin Van Den

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2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission (vol 5, e00245-20, 2020)

MSYSTEMS

IF4.6

2020-06-30

OAAI

Dietz, Leslie; Horve, Patrick F.; Coil, David A.; Fretz, Mark; Eisen, Jonathan A.; Van den Wymelenberga, Kevin

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Research Directions