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Alex Mitchell

Quadram Institute

33H-index
115Paper Count
3.6WCitation Count
Published Papers 37
Publication Date
Dose De-Escalation of Alemtuzumab in Matched Unrelated Donor Hematopoietic Stem Cell Transplantation: A Single Centre Retrospective Study
errBLOOD
IF23.1
err2024-11-05
err0
PREAI
errMadkhali, Maymoon Mohammed; Mitchell, Alex; Wright, Callum; Pearce, Kim; Pagan, Sarah; Duncan, Louise; Macdonald, Jamie; Lam, Jason; Milne, Paul; Publicover, Amy; Hurst, Erin; Bigley, Venetia; Hale, Geoff; Collin, Matthew
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Location, location, location: mapping the lymphoma tumor microenvironment using spatial transcriptomics
err2023-10-04
err1
errOAAI
errPickard, Keir; Stephenson, Emily; Mitchell, Alex; Jardine, Laura; Bacon, Chris M.
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Inter-comparison of marine microbiome sampling protocols
err2023-08-19
err3
errOAAI
errPascoal, Francisco; Tomasino, Maria Paola; Piredda, Roberta; Quero, Grazia Marina; Torgo, Luis; Poulain, Julie; Galand, Pierre E.; Fuhrman, Jed A.; Mitchell, Alex; Tinta, Tinkara; Turk Dermastia, Timotej; Fernandez-Guerra, Antonio; Vezzi, Alessandro; Logares, Ramiro; Malfatti, Francesca; Endo, Hisashi; Dabrowska, Anna Maria; De Pascale, Fabio; Sanchez, Pablo; Henry, Nicolas; Fosso, Bruno; Wilson, Bryan; Toshchakov, Stephan; Ferrant, Gregory Kevin; Grigorov, Ivo; Vieira, Fabio Rocha Jimenez; Costa, Rodrigo; Pesant, Stephane; Magalhaes, Catarina
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Compositional Variations between Adult and Infant Skin Microbiome: An Update
err2023-06-02
err2
errOAAI
errMurphy, Barry; Hoptroff, Michael; Arnold, David; Cawley, Andrew; Smith, Emily; Adams, Suzanne E. E.; Mitchell, Alex; Horsburgh, Malcolm J. J.; Hunt, Joanne; Dasgupta, Bivash; Ghatlia, Naresh; Samaras, Samantha; MacGuire-Flanagan, Ashely; Sharma, Kirti
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Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes
err2022-11-18
err7
errOAAI
errLin, Qiang; Xavier, Basil Britto; Alako, Blaise T. F.; Mitchell, Alex L.; Rajakani, Sahaya Glingston; Glupczynski, Youri; Finn, Robert D.; Cochrane, Guy; Malhotra-Kumar, Surbhi
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Unifying the known and unknown microbial coding sequence space
err2022-03-31
err45
errOAAI
errVanni, Chiara; Schechter, Matthew S.; Acinas, Silvia G.; Barberan, Albert; Buttigieg, Pier Luigi; Casamayor, Emilio O.; Delmont, Tom O.; Duarte, Carlos M.; Eren, A. Murat; Finn, Robert D.; Kottmann, Renzo; Mitchell, Alex; Sanchez, Pablo; Siren, Kimmo; Steinegger, Martin; Gloeckner, Frank Oliver; Fernandez-Guerra, Antonio
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Alteration of barrier properties, stratum corneum ceramides and microbiome composition in response to lotion application on cosmetic dry skin
err2022-03-26
err24
errOAAI
errMurphy, Barry; Grimshaw, Sally; Hoptroff, Michael; Paterson, Sarah; Arnold, David; Cawley, Andrew; Adams, Suzanne E.; Falciani, Francesco; Dadd, Tony; Eccles, Richard; Mitchell, Alex; Lathrop, William F.; Marrero, Diana; Yarova, Galina; Villa, Ana; Bajor, John S.; Feng, Lin; Mihalov, Dawn; Mayes, Andrew E.
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The InterPro protein families and domains database: 20 years on
err2020-11-06
err1.4K
errOAAI
errBlum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo A.; Williams, Lowri; Bork, Peer; Bridge, Alan; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex; Finn, Robert D.
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Microbiota Characterization of Agricultural Green Waste-Based Suppressive Composts Using Omics and Classic Approaches
err2020-03-04
err23
errOAAI
errScotti, Riccardo; Mitchell, Alex L.; Pane, Catello; Finn, Rob D.; Zaccardelli, Massimo
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Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics
err2020-01-20
err79
errOAAI
errArikan, Muzaffer; Mitchell, Alex L.; Finn, Robert D.; Gurel, Filiz
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MGnify: the microbiome analysis resource in 2020
err2019-11-07
err373
errOAAI
errMitchell, Alex L.; Almeida, Alexandre; Beracochea, Martin; Boland, Miguel; Burgin, Josephine; Cochrane, Guy; Crusoe, Michael R.; Kale, Varsha; Potter, Simon C.; Richardson, Lorna J.; Sakharova, Ekaterina; Scheremetjew, Maxim; Korobeynikov, Anton; Shlemov, Alex; Kunyayskaya, Olga; Lapidus, Alla; Finn, Robert D.
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Microbial community drivers of PK/NRP gene diversity in selected global soils
err2019-05-22
err33
errOAAI
errBorsetto, Chiara; Amos, Gregory C. A.; da Rocha, Ulisses Nunes; Mitchell, Alex L.; Finn, Robert D.; Laidi, Rabah Forar; Vallin, Carlos; Pearce, David A.; Newsham, Kevin K.; Wellington, Elizabeth M. H.
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Microbial abundance, activity and population genomic profiling with mOTUs2
err2019-03-04
err262
errOAAI
errMilanese, Alessio; Mende, Daniel R.; Paoli, Lucas; Salazar, Guillem; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Hingamp, Pascal; Alves, Renato; Costea, Paul I.; Coelho, Luis Pedro; Schmidt, Thomas S. B.; Almeida, Alexandre; Mitchell, Alex L.; Finn, Robert D.; Huerta-Cepas, Jaime; Bork, Peer; Zeller, Georg; Sunagawa, Shinichi
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A human gut bacterial genome and culture collection for improved metagenomic analyses
err2019-02-04
err466
errOAAI
errForster, Samuel C.; Kumar, Nitin; Anonye, Blessing O.; Almeida, Alexandre; Viciani, Elisa; Stares, Mark D.; Dunn, Matthew; Mkandawire, Tapoka T.; Zhu, Ana; Shao, Yan; Pike, Lindsay J.; Louie, Thomas; Browne, Hilary P.; Mitchell, Alex L.; Neville, B. Anne; Finn, Robert D.; Lawley, Trevor D.
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InterPro in 2019: improving coverage, classification and access to protein sequence annotations
err2018-11-06
err1.1K
errOAAI
errMitchell, Alex L.; Attwood, Teresa K.; Babbitt, Patricia C.; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D.; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I.; Gough, Julian; Haft, David R.; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurelien; Madeira, Fabio; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine; Pandurangan, Arun P.; Paysan-Lafosse, Typhaine; Pesseat, Sebastien; Potter, Simon C.; Qureshi, Matloob A.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna J.; Rivoire, Catherine; Salazar, Gustavo A.; Sangrador-Vegas, Amaia; Sigrist, Christian J. A.; Sillitoe, Ian; Sutton, Granger G.; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Yong, Siew-Yit; Finn, Robert D.
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Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
err2018-05-11
err79
errOAAI
errAlmeida, Alexandre; Mitchell, Alex L.; Tarkowska, Aleksandra; Finn, Robert D.
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EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
err2017-10-23
err145
errOAAI
errMitchell, Alex L.; Scheremetjew, Maxim; Denise, Hubert; Potter, Simon; Tarkowska, Aleksandra; Qureshi, Matloob; Salazar, Gustavo A.; Pesseat, Sebastien; Boland, Miguel A.; Hunter, Fiona M. I.; ten Hoopen, Petra; Alako, Blaise; Amid, Clara; Wilkinson, Darren J.; Curtis, Thomas P.; Cochrane, Guy; Finn, Robert D.
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The metagenomic data life-cycle: standards and best practices
err2017-06-16
err39
errOAAI
errten Hoopen, Petra; Finn, Robert D.; Bongo, Lars Ailo; Corre, Erwan; Fosso, Bruno; Meyer, Folker; Mitchell, Alex; Pelletier, Eric; Pesole, Graziano; Santamaria, Monica; Willassen, Nils Peder; Cochrane, Guy
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