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RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes Haft, Daniel H.; Badretdin, Azat; Coulouris, George; Dicuccio, Michael; Durkin, A. Scott; Jovenitti, Eric; Li, Wenjun; Mersha, Megdelawit; O'Neill, Kathleen R.; Virothaisakun, Joel; Thibaud-Nissen, Francoise Share Save
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InterPro in 2022 Paysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan; Colwell, Lucy; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex Share Save
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Consensus on β-Lactamase Nomenclature Bradford, Patricia A.; Bonomo, Robert A.; Bush, Karen; Carattoli, Alessandra; Feldgarden, Michael; Haft, Daniel H.; Ishii, Yoshikazu; Jacoby, George A.; Klimke, William; Palzkill, Timothy; Poirel, Laurent; Rossolini, Gian Maria; Tamma, Pranita D.; Arias, Cesar A. Share Save
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence Feldgarden, Michael; Brover, Vyacheslav; Gonzalez-Escalona, Narjol; Frye, Jonathan G.; Haendiges, Julie; Haft, Daniel H.; Hoffmann, Maria; Pettengill, James B.; Prasad, Arjun B.; Tillman, Glenn E.; Tyson, Gregory H.; Klimke, William Share Save
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation Li, Wenjun; O'Neill, Kathleen R.; Haft, Daniel H.; DiCuccio, Michael; Chetvernin, Vyacheslav; Badretdin, Azat; Coulouris, George; Chitsaz, Farideh; Derbyshire, Myra K.; Durkin, A. Scott; Gonzales, Noreen R.; Gwadz, Marc; Lanczycki, Christopher J.; Song, James S.; Thanki, Narmada; Wang, Jiyao; Yamashita, Roxanne A.; Yang, Mingzhang; Zheng, Chanjuan; Marchler-Bauer, Aron; Thibaud-Nissen, Francoise Share Save
The InterPro protein families and domains database: 20 years on Blum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo A.; Williams, Lowri; Bork, Peer; Bridge, Alan; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex; Finn, Robert D. Share Save
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates (vol 63, e00483-19, 2019) Feldgarden, Michael; Brover, Vyacheslav; Haft, Daniel H.; Prasad, Arjun B.; Slotta, Douglas J.; Tolstoy, Igor; Tyson, Gregory H.; Zhao, Shaohua; Hsu, Chih-Hao; McDermott, Patrick F.; Tadesse, Daniel A.; Morales, Cesar; Simmons, Mustafa; Tillman, Glenn; Wasilenko, Jamie; Folster, Jason P.; Klimke, William Share Save
A Standard Numbering Scheme for Class C β-Lactamases Mack, Andrew R.; Barnes, Melissa D.; Taracila, Magdalena A.; Hujer, Andrea M.; Hujer, Kristine M.; Cabot, Gabriel; Feldgarden, Michael; Haft, Daniel H.; Klimke, William; van den Akker, Focco; Vila, Alejandro J.; Smania, Andrea; Haider, Shozeb; Papp-Wallace, Krisztina M.; Bradford, Patricia A.; Rossolini, Gian Maria; Docquier, Jean-Denis; Frere, Jean-Marie; Galleni, Moreno; Hanson, Nancy D.; Oliver, Antonio; Plesiat, Patrick; Poirel, Laurent; Nordmann, Patrice; Palzkill, Timothy G.; Jacoby, George A.; Bush, Karen; Bonomo, Robert A. Share Save
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants Makarova, Kira S.; Wolf, Yuri, I; Iranzo, Jaime; Shmakov, Sergey A.; Alkhnbashi, Omer S.; Brouns, Stan J. J.; Charpentier, Emmanuelle; Cheng, David; Haft, Daniel H.; Horvath, Philippe; Moineau, Sylvain; Mojica, Francisco J. M.; Scott, David; Shah, Shiraz A.; Siksnys, Virginijus; Terns, Michael P.; Venclovas, Ceslovas; White, Malcolm F.; Yakunin, Alexander F.; Yan, Winston; Zhang, Feng; Garrett, Roger A.; Backofen, Rolf; van der Oost, John; Barrangou, Rodolphe; Koonin, Eugene, V Share Save
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates Feldgarden, Michael; Brover, Vyacheslav; Haft, Daniel H.; Prasad, Arjun B.; Slotta, Douglas J.; Tolstoy, Igor; Tyson, Gregory H.; Zhao, Shaohua; Hsu, Chih-Hao; McDermott, Patrick F.; Tadesse, Daniel A.; Morales, Cesar; Simmons, Mustafa; Tillman, Glenn; Wasilenko, Jamie; Folster, Jason P.; Klimke, William Share Save
Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes Partridge, Sally R.; Di Pilato, Vincenzo; Doi, Yohei; Feldgarden, Michael; Haft, Daniel H.; Klimke, William; Kumar-Singh, Samir; Liu, Jian-Hua; Malhotra-Kumar, Surbhi; Prasad, Arjun; Rossolini, Gian Maria; Schwarz, Stefan; Shen, Jianzhong; Walsh, Timothy; Wang, Yang; Xavier, Basil Britto Share Save
Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria Gao, Na; Xia, Ming; Dai, Jingcheng; Yu, Dianzhen; An, Weixing; Li, Shuyang; Liu, Shuangyuan; He, Penghui; Zhang, Liping; Wu, Zhenbin; Bi, Xuezhi; Chen, Shouwen; Haft, Daniel H.; Qiu, Dongru Share Save
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