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Jean‐Daniel Zucker

Sorbonne Universite

45H-index
330Paper Count
1.6WCitation Count
Published Papers 48
Publication Date
Prominent mediatory role of gut microbiome in the effect of lifestyle on host metabolic phenotypes
err2025-12-31
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PREAI
errAdriouch, Solia; Belda, Eugeni; Swartz, Timothy D.; Forslund, Sofia; Prifti, Edi; Aron-Wisnewsky, Judith; Chakaroun, Rima; Nielsen, Trine; Poitou, Christine; Bel-Lassen, Pierre; Rouault, Christine; Le Roy, Tiphaine; Andrikopoulos, Petros; Chechi, Kanta; Puig-Castellvi, Francesc; Dionicio, Ines Castro; Froguel, Philippe; Holmes, Bridget; Alili, Rohia; Andreelli, Fabrizio; Soula, Hedi; Salem, Joe-Elie; Falony, Gwen; Vieira-Silva, Sara; Raes, Jeroen; Bork, Peer; Stumvoll, Michael; Pedersen, Oluf; Ehrlich, S. Dusko; Dumas, Marc-Emmanuel; Oppert, Jean-Michel; Dao, Maria Carlota; Zucker, Jean-Daniel; Clement, Karine
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PlantSAM: An object detection-driven segmentation pipeline for herbarium specimens
err2025-12-01
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errOAAI
errSklab, Youcef; Castanet, Florian; Ariouat, Hanane; Arib, Souhila; Zucker, Jean-daniel; Chenin, Eric; Prifti, Edi
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ECGtizer: An open-source, fully automated pipeline for digitization and signal recovery from paper electrocardiograms
err2025-09-26
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errOAAI
errAlex Lence; Ahmad Fall; Samuel David Cohen; Federica Granese; Jean-Daniel Zucker; Joe-Elie Salem; Edi Prifti
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Enhancing plant morphological trait identification in herbarium collections through deep learning-based segmentation
err2025-02-13
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errOAAI
errAriouat, Hanane; Sklab, Youcef; Prifti, Edi; Zucker, Jean-Daniel; Chenin, Eric
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Comparative analysis of the duodenojejunal microbiome with the oral and fecal microbiomes reveals its stronger association with obesity and nutrition
err2024-10-07
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errOAAI
errSteinbach, Emilie; Belda, Eugeni; Alili, Rohia; Adriouch, Solia; Dauriat, Charlene J. G.; Donatelli, Gianfranco; Dumont, Jean-Loup; Pacini, Filippo; Tuszynski, Thierry; Pelloux, Veronique; Jacques, Flavien; Creusot, Laura; Coles, Emavieve; Taillandier, Paul; Vazquez Gomez, Marta; Masi, Davide; Mateo, Veronique; Andre, Sebastien; Kordahi, Melissa; Rouault, Christine; Zucker, Jean-Daniel; Sokol, Harry; Genser, Laurent; Chassaing, Benoit; Le Roy, Tiphaine; Clement, Karine
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Deep learning methods in metagenomics: a review
err2024-04-17
err8
errOAAI
errRoy, Gaspar; Prifti, Edi; Belda, Eugeni; Zucker, Jean- Daniel
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Functional alterations and predictive capacity of gut microbiome in type 2 diabetes
err2023-12-16
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errOAAI
errDash, Nihar Ranjan; Al Bataineh, Mohammad T.; Alili, Rohia; Al Safar, Habiba; Alkhayyal, Noura; Prifti, Edi; Zucker, Jean-Daniel; Belda, Eugeni; Clement, Karine
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Qluster: An easy-to-implement generic workflow for robust clustering of health data
err2023-02-06
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errOAAI
errEsnault, Cyril; Rollot, Melissa; Guilmin, Pauline; Zucker, Jean-Daniel
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LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning
err2022-12-22
err4
errOAAI
errMartenot, Vincent; Masdeu, Valentin; Cupe, Jean; Gehin, Faustine; Blanchon, Margot; Dauriat, Julien; Horst, Alexander; Renaudin, Michael; Girard, Philippe; Zucker, Jean-Daniel
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Exploring multi-modal evacuation strategies for a landlocked population using large-scale agent-based simulations
err2022-05-16
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errOAAI
errChapuis, Kevin; Pham Minh-Duc; Brugiere, Arthur; Zucker, Jean-Daniel; Drogoul, Alexis; Tranouez, Pierrick; Daude, Eric; Taillandier, Patrick
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The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass
err2022-04-18
err23
errOAAI
errDebedat, Jean; Le Roy, Tiphaine; Voland, Lise; Belda, Eugeni; Alili, Rohia; Adriouch, Solia; Lassen, Pierre Bel; Kasahara, Kazuyuki; Hutchison, Evan; Genser, Laurent; Torres, Licia; Gamblin, Camille; Rouault, Christine; Zucker, Jean-Daniel; Kapel, Nathalie; Poitou, Christine; Marcelin, Genevieve; Rey, Federico E.; Aron-Wisnewsky, Judith; Clement, Karine
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Microbiome and metabolome features of the cardiometabolic disease spectrum
err2022-02-17
err125
errOAAI
errFromentin, Sebastien; Forslund, Sofia K.; Chechi, Kanta; Aron-Wisnewsky, Judith; Chakaroun, Rima; Nielsen, Trine; Tremaroli, Valentina; Ji, Boyang; Prifti, Edi; Myridakis, Antonis; Chilloux, Julien; Andrikopoulos, Petros; Fan, Yong; Olanipekun, Michael T.; Alves, Renato; Adiouch, Solia; Bar, Noam; Talmor-Barkan, Yeela; Belda, Eugeni; Caesar, Robert; Coelho, Luis Pedro; Falony, Gwen; Fellahi, Soraya; Galan, Pilar; Galleron, Nathalie; Helft, Gerard; Hoyles, Lesley; Isnard, Richard; Le Chatelier, Emmanuelle; Julienne, Hanna; Olsson, Lisa; Pedersen, Helle Krogh; Pons, Nicolas; Quinquis, Benoit; Rouault, Christine; Roume, Hugo; Salem, Joe-Elie; Schmidt, Thomas S. B.; Vieira-Silva, Sara; Li, Peishun; Zimmermann-Kogadeeva, Maria; Lewinter, Christian; Sondertoft, Nadja B.; Hansen, Tue H.; Gauguier, Dominique; Gotze, Jens Peter; Kober, Lars; Kornowski, Ran; Vestergaard, Henrik; Hansen, Torben; Zucker, Jean-Daniel; Hercberg, Serge; Letunic, Ivica; Backhed, Fredrik; Oppert, Jean-Michel; Nielsen, Jens; Raes, Jeroen; Bork, Peer; Stumvoll, Michael; Segal, Eran; Clement, Karine; Dumas, Marc-Emmanuel; Ehrlich, S. Dusko; Pedersen, Oluf
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Characterization of the Gut Microbiota in Individuals with Overweight or Obesity during a Real-World Weight Loss Dietary Program: A Focus on the Bacteroides 2 Enterotype
err2021-12-22
err14
errOAAI
errAlili, Rohia; Belda, Eugeni; Fabre, Odile; Pelloux, Veronique; Giordano, Nils; Legrand, Remy; Bel Lassen, Pierre; Swartz, Timothy D.; Zucker, Jean-Daniel; Clement, Karine
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Deep learning analysis of electrocardiogram for risk prediction of drug-induced arrhythmias and diagnosis of long QT syndrome
err2021-09-01
err36
errOAAI
errPrifti, Edi; Fall, Ahmad; Davogustto, Giovanni; Pulini, Alfredo; Denjoy, Isabelle; Funck-Brentano, Christian; Khan, Yasmin; Durand-Salmon, Alexandre; Badilini, Fabio; Wells, Quinn S.; Leenhardt, Antoine; Zucker, Jean-Daniel; Roden, Dan M.; Extramiana, Fabrice; Salem, Joe-Elie
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Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial
err2021-08-02
err17
errOAAI
errLassen, Pierre Bel; Belda, Eugeni; Prifti, Edi; Dao, Maria Carlota; Specque, Florian; Henegar, Corneliu; Rinaldi, Laure; Wang, Xuedan; Kennedy, Sean P.; Zucker, Jean-Daniel; Calame, Wim; Lamarche, Benoit; Claus, Sandrine P.; Clement, Karine
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From correlation to causality: the case of Subdoligranulum
err2020-12-15
err130
errOAAI
errVan Hul, Matthias; Le Roy, Tiphaine; Prifti, Edi; Dao, Maria Carlota; Paquot, Adrien; Zucker, Jean-Daniel; Delzenne, Nathalie M.; Muccioli, Giulio; Clement, Karine; Cani, Patrice D.
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Interpretable and accurate prediction models for metagenomics data
err2020-03-09
err33
errOAAI
errPrifti, Edi; Chevaleyre, Yann; Hanczar, Blaise; Belda, Eugeni; Danchin, Antoine; Clement, Karine; Zucker, Jean-Daniel
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Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission
err2020-01-21
err45
errOAAI
errAl Assal, Karina; Prifti, Edi; Belda, Eugeni; Sala, Priscila; Clement, Karine; Dao, Maria-Carlota; Dore, Joel; Levenez, Florence; Taddei, Carla R.; Fonseca, Danielle Cristina; Rocha, Ilanna Marques; Balmant, Bianca Depieri; Thomas, Andrew Maltez; Santo, Marco A.; Dias-Neto, Emmanuel; Setubal, Joao Carlos; Zucker, Jean-Daniel; Belarmino, Giliane; Torrinhas, Raquel Susana; Waitzberg, Dan L.
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