logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
M

Morten Nielsen

technical university of denmark

89H-index
422Paper Count
4.1WCitation Count
Published Papers 126
Publication Date
logo
NetMHCIIphosPan: A Machine Learning Tool for Predicting HLA Class II Antigen Presentation of Phosphorylated Peptides
errJournal of Proteome Research
IF3.6
err2026-04-17
err0
PREAI
errHeli M. Garcia Alvarez; Saghar Kaabinejadian; Hooman Yari; Chloe M. Shepherd; William H. Hildebrand; Alessandro Sette; Bjoern Peters; Robert Parker; Nicola Ternette; Morten Nielsen
errShare
errSave
Integrated computational and experimental workflow identifies a novel T-cell epitope from Babesia bovis RON5 recognized by infected cattle
errVaccine
IF3.5
err2025-12-10
err0
PREAI
errMagalí Nicole Valenzano; Valeria Noely Montenegro; Martina Soledad Paoletta; María José Gravisaco; Beatriz Valentini; Eliana Carolina Guillemi; Liliana Alvarez; Morten Nielsen; Silvina Elizabeth Wilkowsky
errShare
errSave
T-cell receptor insights: Determinants of Major Histocompatibility Complex class I versus class II recognition
errProtein Science
IF5.2
err2025-08-15
err0
errOAAI
errMarcus De Almeida Mendes; Leila Chihab; Jonas Birkelund Nilsson; Lonneke Scheffer; Morten Nielsen; Bjoern Peters
errShare
errSave
NetMHCpan-4.2: improved prediction of CD8+ epitopes by use of transfer learning and structural features
errFrontiers in Immunology
IF5.9
err2025-08-07
err0
errOAAI
errJonas Birkelund Nilsson; Jason Greenbaum; Bjoern Peters; Morten Nielsen
errShare
errSave
Molecular characterization of the archaic HLA-B*73:01 allele reveals presentation of a unique peptidome and skewed engagement by KIR2DL2
errJournal of Biological Chemistry
IF3.9
err2025-07-30
err0
errOAAI
errPhilipp. Ross; Hugo G. Hilton; Jane Lodwick; Tomasz Slezak; Lisbeth A. Guethlein; Curtis P. McMurtrey; Alex S. Han; Morten Nielsen; Daniel Yong; Charles L. Dulberger; Kristof T. Nolan; Sobhan Roy; Caitlin D. Castro; William H. Hildebrand; Minglei Zhao; Anthony Kossiakoff; Peter Parham; Erin J. Adams
errShare
errSave
Identification of T-cell epitopes of the intracellular parasite Babesia bovis by immunopeptidomic analysis of BoLA-II presented peptides
errVaccine
IF3.5
err2025-07-08
err0
PREAI
errMagalí Nicole Valenzano; Robert Parker; Annalisa Nicastri; Beatriz Valentini; María José Gravisaco; Ximena Ferrara Muñiz; María Emilia Eirin; Valeria Noely Montenegro; Morten Nielsen; Nicola Ternette; Silvina Elizabeth Wilkowsky
errShare
errSave
On the impact of local protein structure features on prediction of major histocompatibility complex class I and II antigen presentation
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-07-01
err0
PREAI
errWan, Yat-tsai Richie; Nielsen, Morten
errShare
errSave
TCRCluster: a novel approach to T-cell receptor latent featurization and clustering using contrastive learning-guided two-stage variational autoencoders
errgenomics proteomics bioinformatics
IF2.8
err2025-05-27
err0
errOAAI
errWan, Yat-Tsai Richie; Nielsen, Morten
errShare
errSave
Fully Phased Population-Prevalent East African Cattle BoLA-I Alleles Determined Using PacBio HiFi Long-Read Sequencing Represent Five Novel Specificities With Distinctive Peptide Binding Potential
errHLA
IF4.1
err2025-04-17
err0
errOAAI
errObara, Isaiah; Sandro, Andreotti; Elati, Khawla; Conneley, Timothy; Nielsen, Morten; Githaka, Naftaly; Nanteza, Anne; Bishop, Richard; Nijhof, Ard
errShare
errSave
The receiver operating characteristic curve accurately assesses imbalanced datasets
errPATTERNS
IF7.4
err2024-06-01
err5
errOAAI
errRichardson, Eve; Trevizani, Raphael; Greenbaum, Jason A.; Carter, Hannah; Nielsen, Morten; Peters, Bjoern
errShare
errSave
Next-generation IEDB tools: a platform for epitope prediction and analysis
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-05-23
err4
errOAAI
errYan, Zhen; Kim, Kevin; Kim, Haeuk; Ha, Brendan; Gambiez, Anais; Bennett, Jason; de Almeida Mendes, Marcus Fabiano; Trevizani, Raphael; Mahita, Jarjapu; Richardson, Eve; Marrama, Daniel; Blazeska, Nina; Kosaloglu-Yalcin, Zeynep; Nielsen, Morten; Sette, Alessandro; Peters, Bjoern; Greenbaum, Jason A.
errShare
errSave
IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-04-03
err4
errOAAI
errBorch, Annie; Carri, Ibel; Reynisson, Birkir; Alvarez, Heli M. Garcia; Munk, Kamilla K.; Montemurro, Alessandro; Kristensen, Nikolaj Pagh; Tvingsholm, Siri A.; Holm, Jeppe Sejero; Heeke, Christina; Moss, Keith Henry; Hansen, Ulla Kring; Schaap-Johansen, Anna-Lisa; Bagger, Frederik Otzen; de Lima, Vinicius Araujo Barbosa; Rohrberg, Kristoffer S.; Funt, Samuel A.; Donia, Marco; Svane, Inge Marie; Lassen, Ulrik; Barra, Carolina; Nielsen, Morten; Hadrup, Sine Reker
errShare
errSave
Enhancing TCR specificity predictions by combined pan- and peptide-specific training, loss-scaling, and sequence similarity integration
errELIFE
IF0
err2024-03-04
err8
errOAAI
errJensen, Mathias Fynbo; Nielsen, Morten
errShare
errSave
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-02-08
err21
errOAAI
errHoie, Magnus Haraldson; Gade, Frederik Steensgaard; Johansen, Julie Maria; Wurtzen, Charlotte; Winther, Ole; Nielsen, Morten; Marcatili, Paolo
errShare
errSave
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes
errNAR CANCER
IF3.2
err2024-01-29
err3
errOAAI
errWan, Yat-tsai Richie; Kosaloglu-Yalcin, Zeynep; Peters, Bjoern; Nielsen, Morten
errShare
errSave
MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer
errNATURE COMMUNICATIONS
IF15.7
err2024-01-22
err3
errOAAI
errLiao, Hanqing; Barra, Carolina; Zhou, Zhicheng; Peng, Xu; Woodhouse, Isaac; Tailor, Arun; Parker, Robert; Carre, Alexia; Borrow, Persephone; Hogan, Michael J.; Paes, Wayne; Eisenlohr, Laurence C.; Mallone, Roberto; Nielsen, Morten; Ternette, Nicola
errShare
errSave
New light on the HLA-DR immunopeptidomic landscape
errJOURNAL OF LEUKOCYTE BIOLOGY
IF3.1
err2024-01-12
err2
PREAI
errJensen, Emilie Egholm Bruun; Reynisson, Birkir; Barra, Carolina; Nielsen, Morten
errShare
errSave
Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning
errSCIENCE ADVANCES
IF12.5
err2023-11-24
err14
errOAAI
errNilsson, Jonas B.; Kaabinejadian, Saghar; Yari, Hooman; Kester, Michel G. D.; van Balen, Peter; Hildebrand, William H.; Nielsen, Morten
errShare
errSave
A meta-analysis of epitopes in prostate-specific antigens identifies opportunities and knowledge gaps
errHUMAN IMMUNOLOGY
IF2.2
err2023-11-01
err0
errOAAI
errFoos, Gabriele; Blazeska, Nina; Nielsen, Morten; Carter, Hannah; Kosaloglu-Yalcin, Zeynep; Peters, Bjoern; Sette, Alessandro
errShare
errSave
Benchmarking data-driven filtering for denoising of TCRpMHC single-cell data
errSCIENTIFIC REPORTS
IF3.9
err2023-09-26
err3
errOAAI
errMontemurro, Alessandro; Povlsen, Helle Rus; Jessen, Leon Eyrich; Nielsen, Morten
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Ruedi Aebersold
H-index: 198 · Papers: 1.2K
A
Alessandro Sette
H-index: 174 · Papers: 1.4K
J
Jedd D. Wolchok
H-index: 173 · Papers: 1.4K
A
André Franke
H-index: 152 · Papers: 1.2K
A
Andrew Rambaut
H-index: 150 · Papers: 521
View more