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M

Mikhail Kolmogorov

University of California San Diego
H指数:25
被引数:1.4万

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Long-read sequencing of single cell-derived melanoma sublines reveals divergent and parallel genomic and epigenomic evolutionary trajectories

单细胞衍生的黑色素瘤亚系的长期测序揭示了不同的平行基因组及表观基因组进化轨迹

Nature Communications
IF15.7
2026-07-160
OAAI
Yuelin Liu; Anton Goretsky; Ayse G. Keskus; Salem Malikic; Tanveer Ahmad; E. Michael Gertz; Farid Rashidi Mehrabadi; Michael Kelly; Maria O. Hernandez; Charlie Seibert; Juan Manuel Caravaca; Kayla Kline; Yongmei Zhao; Ying Wu; Biraj Shrestha; Bao Tran; Arindam Ghosh; Xiwen Cui; Antonella Sassano; Laksh Malik; Breeana Baker; Cornelis Blauwendraat; Kimberley J. Billingsley; Sandra Burkett; Eva Perez-Guijarro; Glenn Merlino; Erin K. Molloy; S. Cenk Sahinalp; Chi-Ping Day; Mikhail Kolmogorov
Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data

BJ和IMR-90人成纤维细胞系的单倍型解析基因组组装揭示广泛的基因组结构变异，并能够重新分析历史测序数据

Nucleic Acids Research
IF13.1
2026-04-290
OA
T Rhyker Ranallo-Benavidez; Yue Hao; Emilia Volpe; Maryam Jehangir; Noelle Fukushima; Zachary D Stephens; Ogechukwu Mbegbu; Matteo T Ungaro; Rebecca Reiman; Jessica Molnar; Danyael Murphy; Dorothy Marie Paredes; Shukmei Wong; Kara Karaniuk; Stephanie Buchholtz; Jean-Pierre Kocher; Jonathan Keats; Mitchell J Machiela; Mikhail Kolmogorov; Benedict Paten; Simona Giunta; Floris P Barthel; null
Proof-of-concept study for the detection of somatic structural variant driver alterations using HiFi long-read sequencing in a pediatric leukemia cohort

使用高保真长读长测序检测儿科白血病队列中体细胞结构变异驱动突变的可行性研究

npj Genomic Medicine
IF4.8
2026-04-090
OA
Lisa A. Lansdon; Byunggil Yoo; Ayse Keskus; Irina Pushel; Chengpeng Bi; Tanveer Ahmad; Asher Bryant; Adam Walter; Margaret Gibson; Mary Rindler; Weijie Li; Sultan M. Habeebu; Linda D. Cooley; John Herriges; Elena Repnikova; Lei Zhang; Keith J. August; Terrie G. Flatt; Alan S. Gamis; Erin M. Guest; J. Allyson Hays; Maxine Hetherington; Karen Lewing; Tomi Pastinen; Mikhail Kolmogorov; Midhat S. Farooqi
Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

使用deepsmatoma实现多种测序技术的准确体细胞小变异发现

Nature Biotechnology
IF41.7
2025-10-160
PRE
Jimin Park; Daniel E. Cook; Pi-Chuan Chang; Alexey Kolesnikov; Lucas Brambrink; Juan Carlos Mier; Joshua Gardner; Brandy McNulty; Samuel Sacco; Ayse G. Keskus; Asher Bryant; Tanveer Ahmad; Jyoti Shetty; Yongmei Zhao; Bao Tran; Giuseppe Narzisi; Adrienne Helland; Byunggil Yoo; Irina Pushel; Lisa A. Lansdon; Chengpeng Bi; Adam Walter; Margaret Gibson; Tomi Pastinen; Rebecca Reiman; Sharvari Mankame; T. Rhyker Ranallo-Benavidez; Christine Brown; Nicolas Robine; Floris P. Barthel; Midhat S. Farooqi; Karen H. Miga; Andrew Carroll; Mikhail Kolmogorov; Benedict Paten; Kishwar Shafin
Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

更正：开发和广泛测序一个得到广泛认可的“Genome in a Bottle”匹配的肿瘤-正常配对样本

Scientific Data
IF6.9
2025-08-080
OAAI
Jennifer H. McDaniel; Vaidehi Patel; Nathan D. Olson; Hua-Jun He; Zhiyong He; Kenneth D. Cole; Alexander A. Gooden; Anthony Schmitt; Kristin Sikkink; Fritz J. Sedlazeck; Harsha Doddapaneni; Shalini N. Jhangiani; Donna M. Muzny; Marie-Claude Gingras; Heer Mehta; Sairam Behera; Luis F. Paulin; Alex R. Hastie; Hung-Chun Yu; Victor Weigman; Alison Rojas; Katie Kennedy; Jamie Remington; Isai Salas-González; Mitch Sudkamp; Kelly Wiseman; Bryan R. Lajoie; Shawn Levy; Miten Jain; Stuart Akeson; Giuseppe Narzisi; Zoe Steinsnyder; Catherine Reeves; Jennifer Shelton; Sarah B. Kingan; Christine Lambert; Primo Baybayan; Aaron M. Wenger; Ian J. McLaughlin; Aaron Adamson; Christopher Kingsley; Melanie Wescott; Young Kim; Benedict Paten; Jimin Park; Ivo Violich; Karen H. Miga; Joshua Gardner; Brandy McNulty; Gail L. Rosen; Rajiv McCoy; Francesco Brundu; Erfan Sayyari; Konrad Scheffler; Sean Truong; Severine Catreux; Lesley Chapman Hannah; Doron Lipson; Hila Benjamin; Nika Iremadze; Ilya Soifer; Gat Krieger; Stephen Eacker; Mary Wood; Erin Cross; Greg Husar; Stephen Gross; Michael Vernich; Mikhail Kolmogorov; Tanveer Ahmad; Ayse G. Keskus; Asher Bryant; Francoise Thibaud-Nissen; Jonathan Trow; Jacqueline Proszynski; Jeremy Wain Hirschberg; Krista Ryon; Christopher E. Mason; Mital S. Bhakta; J. Zachary Sanborn; Elizabeth M. Munding; Justin Wagner; Chunlin Xiao; Andrew S. Liss; Justin M. Zook
Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

开发并广泛测序一种在Genome in a Bottle框架下获得广泛共识的匹配肿瘤-正常样本对

Scientific Data
IF6.9
2025-07-160
OAAI
Jennifer H. McDaniel; Vaidehi Patel; Nathan D. Olson; Hua-Jun He; Zhiyong He; Kenneth D. Cole; Alexander A. Gooden; Anthony Schmitt; Kristin Sikkink; Fritz J. Sedlazeck; Harsha Doddapaneni; Shalini N. Jhangiani; Donna M. Muzny; Marie-Claude Gingras; Heer Mehta; Sairam Behera; Luis F. Paulin; Alex R. Hastie; Hung-Chun Yu; Victor Weigman; Alison Rojas; Katie Kennedy; Jamie Remington; Isai Salas-González; Mitch Sudkamp; Kelly Wiseman; Bryan R. Lajoie; Shawn Levy; Miten Jain; Stuart Akeson; Giuseppe Narzisi; Zoe Steinsnyder; Catherine Reeves; Jennifer Shelton; Sarah B. Kingan; Christine Lambert; Primo Baybayan; Aaron M. Wenger; Ian J. McLaughlin; Aaron Adamson; Christopher Kingsley; Melanie Wescott; Young Kim; Benedict Paten; Jimin Park; Ivo Violich; Karen H. Miga; Joshua Gardner; Brandy McNulty; Gail L. Rosen; Rajiv McCoy; Francesco Brundu; Erfan Sayyari; Konrad Scheffler; Sean Truong; Severine Catreux; Lesley Chapman Hannah; Doron Lipson; Hila Benjamin; Nika Iremadze; Ilya Soifer; Gat Krieger; Stephen Eacker; Mary Wood; Erin Cross; Greg Husar; Stephen Gross; Michael Vernich; Mikhail Kolmogorov; Tanveer Ahmad; Ayse G. Keskus; Asher Bryant; Francoise Thibaud-Nissen; Jonathan Trow; Jacqueline Proszynski; Jeremy Wain Hirschberg; Krista Ryon; Christopher E. Mason; Mital S. Bhakta; J. Zachary Sanborn; Elizabeth M. Munding; Justin Wagner; Chunlin Xiao; Andrew S. Liss; Justin M. Zook
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus通过长读长测序检测癌症基因组中的体细胞结构变异和复杂重排

NATURE BIOTECHNOLOGY
IF41.7
2025-04-041
PRE
Keskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail
Advancing long-read nanopore genome assembly and accurate variant calling for rare disease detection

推进长读纳米孔基因组组装和精确变异呼吁罕见疾病检测

AMERICAN JOURNAL OF HUMAN GENETICS
IF8.1
2025-02-011
PRE
Negi, Shloka; Stenton, Sarah L.; Berger, Seth I.; Canigiula, Paolo; Mcnulty, Brandy; Violich, Ivo; Gardner, Joshua; Hillaker, Todd; O'Rourke, Sara M.; O'Leary, Melanie C.; Carbonell, Elizabeth; Austin-Tse, Christina; Lemire, Gabrielle; Serrano, Jillian; Mangilog, Brian; Vannoy, Grace; Kolmogorov, Mikhail; Vilain, Eric; O'Donnell-Luria, Anne; Delot, Emmanuele; Miga, Karen H.; Monlong, Jean; Paten, Benedict
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

对来自1000基因组项目的样品进行高覆盖纳米孔测序，以建立人类遗传变异的综合目录

GENOME RESEARCH
IF5.5
2024-10-027
PRE
Gustafson, Jonas A.; Gibson, Sophia B.; Damaraju, Nikhita; Zalusky, Miranda P. G.; Hoekzema, Kendra; Twesigomwe, David; Yang, Lei; Snead, Anthony A.; Richmond, Phillip A.; De Coster, Wouter; Olson, Nathan D.; Guarracino, Andrea; Li, Qiuhui; Miller, Angela L.; Goffena, Joy; Anderson, Zachary B.; Storz, Sophie H. R.; Ward, Sydney A.; Sinha, Maisha; Gonzaga-Jauregui, Claudia; Clarke, Wayne E.; Basile, Anna O.; Corvelo, Andre; Reeves, Catherine; Helland, Adrienne; Musunuri, Rajeeva Lochan; Revsine, Mahler; Patterson, Karynne E.; Paschal, Cate R.; Zakarian, Christina; Goodwin, Sara; Jensen, Tanner D.; Robb, Esther; McCombie, William Richard; Sedlazeck, Fritz J.; Zook, Justin M.; Montgomery, Stephen B.; Garrison, Erik; Kolmogorov, Mikhail; Schatz, Michael C.; McLaughlin Jr, Richard N.; Dashnow, Harriet; Zody, Michael C.; Loose, Matt; Jain, Miten; Eichler, Evan E.; Miller, Danny E.
Personalized pangenome references
NATURE METHODS
IF32.1
2024-09-111
PRE
Siren, Jouni; Eskandar, Parsa; Ungaro, Matteo Tommaso; Hickey, Glenn; Eizenga, Jordan M.; Novak, Adam M.; Chang, Xian; Chang, Pi-Chuan; Kolmogorov, Mikhail; Carroll, Andrew; Monlong, Jean; Paten, Benedict
A polymorphic TERT tandem repeat creating an expandable intronic G4 quadruplex is associated with TERT expression, relative leukocyte telomere length and cancer risk

产生可扩展内含子G4四链体的多态性TERT串联重复序列与TERT表达，相对白细胞端粒长度和癌症风险相关

CANCER RESEARCH
IF16.6
2024-03-220
PRE
Florez-Vargas, Oscar; Ho, Michelle; Hogshead, Max; Lee, Chia-Han; Forsythe, Kaitlin; Papenberg, Brenen; Jones, Kristine; Luo, Wen; Teshome, Kedest; Blauwendraat, Cornelis; Kolmogorov, Mikhail; Chanock, Stephen J.; Machiela, Mitchell J.; Schneekloth, John; Gadalla, Shahinaz; Savage, Sharon A.; Mbulaiteye, Sam M.; Prokunina-Olsson, Ludmila
Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing
AMERICAN JOURNAL OF HUMAN GENETICS
IF8.1
2024-03-011
OAAI
Rodriguez, Isabel; Rossi, Nicole M.; Keskus, Ayse G.; Xie, Yi; Ahmad, Tanveer; Bryant, Asher; Lou, Hong; Paredes, Jesica Godinez; Milano, Rose; Rao, Nina; Tulsyan, Sonam; Boland, Joseph F.; Luo, Wen; Liu, Jia; O'Hanlon, Tim; Bess, Jazmyn; Mukhina, Vera; Gaykalova, Daria; Yuki, Yuko; Malik, Laksh; Billingsley, Kimberley J.; Blauwendraat, Cornelis; Carrington, Mary; Yeager, Meredith; Mirabello, Lisa; Kolmogorov, Mikhail; Dean, Michael

研究方向

暂未获取到该数据
B
Benedict Paten
H 指数:95论文数:370被引数:5.1万
P
Pavel A. Pevzner
H 指数:102论文数:456被引数:9.4万
A
Asher Bryant
H 指数:6论文数:20被引数:117
K
Karen H. Miga
H 指数:34论文数:87被引数:1.1万
A
Ayse G. Keskus
H 指数:9论文数:30被引数:264
C
Cornelis Blauwendraat
H 指数:61论文数:377被引数:1.5万
T
Tanveer Ahmad
H 指数:13论文数:87被引数:535
M
Miten Jain
H 指数:43论文数:146被引数:1.7万
L
Laksh Malik
H 指数:9论文数:46被引数:516
K
Kimberley J. Billingsley
H 指数:23论文数:94被引数:4,568