Tomas Babak - Publications, H-index & Citations

Tomas Babak

department of biology

25H指数

45论文数

5.7K被引数

收录论文 28

发表时间

Challenges and opportunities for oncology drug repurposing informed by synthetic lethality 基于合成致死效应的抗肿瘤药物重定位的挑战与机遇

npj Systems Biology and Applications

IF3.5

2025-12-13

OAAI

Michael Vermeulen; Andrew W. Craig; Tomas Babak

EP300 loss of function is a pan-cancer sensitizer to BET inhibition Tomas Babak;

MOLECULAR CANCER THERAPEUTICS

IF5.5

2024-12-09

PREAI

Babak, Tomas; Truesdell, Peter; Vontz, Greg; Heinecke, Peter; Villa, Doris Coto; Dai, Meiou

Pharmacogenomic discovery of genetically targeted cancer therapies optimized against clinical outcomes

NPJ PRECISION ONCOLOGY

IF8

2024-08-28

OAAI

Truesdell, Peter; Chang, Jessica; Villa, Doris Coto; Dai, Meiou; Zhao, Yulei; McIlwain, Robin; Young, Stephanie; Hiley, Shawna; Craig, Andrew W.; Babak, Tomas

A one-step tRNA-CRISPR system for genome-wide genetic interaction mapping in mammalian cells (vol 9, 14499, 2019)用于哺乳动物细胞全基因组遗传相互作用作图的一步trna-crispr系统 (第9卷，14499，2019)

SCIENTIFIC REPORTS

IF3.9

2021-07-08

OAAI

Zhao, Yulei; Tyrishkin, Kathrin; Sjaarda, Calvin; Khanal, Prem; Stafford, Jeff; Rauh, Michael; Liu, Xudong; Babak, Tomas; Yang, Xiaolong

Lineage-specific selection and the evolution of virulence in the Candida clade

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-03-15

OAAI

Singh-Babak, Sheena D.; Babak, Tomas; Fraser, Hunter B.; Johnson, Alexander D.

A one-step tRNA-CRISPR system for genome-wide genetic interaction mapping in mammalian cells

SCIENTIFIC REPORTS

IF3.9

2019-10-10

OAAI

Zhao, Yulei; Tyrishkin, Kathrin; Sjaarda, Calvin; Khanal, Prem; Stafford, Jeff; Rauh, Michael; Liu, Xudong; Babak, Tomas; Yang, Xiaolong

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq (vol 16, 149, 2015)

GENOME BIOLOGY

IF9.4

2016-02-05

OAAI

Marks, Hendrik; Kerstens, Hindrik H. D.; Barakat, Tahsin Stefan; Splinter, Erik; Dirks, Rene A. M.; van Mierlo, Guido; Joshi, Onkar; Wang, Shuang-Yin; Babak, Tomas; Albers, Cornelis A.; Kalkan, Tuezer; Smith, Austin; Jouneau, Alice; de laat, Wouter; Gribnau, Joost; Stunnenberg, Hendrik G.

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq

GENOME BIOLOGY

IF9.4

2015-08-03

OAAI

Marks, Hendrik; Kerstens, Hindrik H. D.; Barakat, Tahsin Stefan; Splinter, Erik; Dirks, Rene A. M.; van Mierlo, Guido; Joshi, Onkar; Wang, Shuang-Yin; Babak, Tomas; Albers, Cornelis A.; Kalkan, Tuezer; Smith, Austin; Jouneau, Alice; de Laat, Wouter; Gribnau, Joost; Stunnenberg, Hendrik G.

Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse

NATURE GENETICS

IF31.8

2015-04-13

175

OAAI

Babak, Tomas; DeVeale, Brian; Tsang, Emily K.; Zhou, Yiqi; Li, Xin; Smith, Kevin S.; Kukurba, Kim R.; Zhang, Rui; Li, Jin Billy; van der Kooy, Derek; Montgomery, Stephen B.; Fraser, Hunter B.

Prediction and verification of mouse tRNA gene families

RNA BIOLOGY

IF3.4

2014-10-27

OAAI

Coughlin, Daniel J.; Babak, Tomas; Nihranz, Chad; Hughes, Timothy R.; Engelke, David R.

Oct4 Is Required ∼E7.5 for Proliferation in the Primitive Streak

PLOS GENETICS

IF3.7

2013-11-14

OAAI

DeVeale, Brian; Brokhman, Irina; Mohseni, Paria; Babak, Tomas; Yoon, Charles; Lin, Anthony; Onishi, Kento; Tomilin, Alexey; Pevny, Larysa; Zandstra, Peter W.; Nagy, Andras; van der Kooy, Derek

Global Analysis of the Evolution and Mechanism of Echinocandin Resistance in Candida glabrata

PLOS PATHOGENS

IF4.9

2012-05-17

191

OAAI

Singh-Babak, Sheena D.; Babak, Tomas; Diezmann, Stephanie; Hill, Jessica A.; Xie, Jinglin Lucy; Chen, Ying-Lien; Poutanen, Susan M.; Rennie, Robert P.; Heitman, Joseph; Cowen, Leah E.

Critical Evaluation of Imprinted Gene Expression by RNA-Seq: A New Perspective

PLOS GENETICS

IF3.7

2012-03-29

197

OAAI

DeVeale, Brian; van der Kooy, Derek; Babak, Tomas

A quantitative atlas of polyadenylation in five mammals 五种哺乳动物聚腺苷酸化的定量图谱

GENOME RESEARCH

IF5.5

2012-03-27

601

OAAI

Derti, Adnan; Garrett-Engele, Philip; MacIsaac, Kenzie D.; Stevens, Richard C.; Sriram, Shreedharan; Chen, Ronghua; Rohl, Carol A.; Johnson, Jason M.; Babak, Tomas

Systematic Detection of Polygenic cis-Regulatory Evolution

PLOS GENETICS

IF3.7

2011-03-31

OAAI

Fraser, Hunter B.; Babak, Tomas; Tsang, John; Zhou, Yiqi; Zhang, Bin; Mehrabian, Margarete; Schadt, Eric E.

NSR-seq transcriptional profiling enables identification of a gene signature of Plasmodium falciparum parasites infecting children

JOURNAL OF CLINICAL INVESTIGATION

IF13.6

2011-03-01

OAAI

Vignali, Marissa; Armour, Christopher D.; Chen, Jingyang; Morrison, Robert; Castle, John C.; Biery, Matthew C.; Bouzek, Heather; Moon, Wonjong; Babak, Tomas; Fried, Michal; Raymond, Christopher K.; Duffy, Patrick E.

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation

BMC GENOMICS

IF3.7

2010-08-13

OAAI

Babak, Tomas; Garrett-Engele, Philip; Armour, Christopher D.; Raymond, Christopher K.; Keller, Mark P.; Chen, Ronghua; Rohl, Carol A.; Johnson, Jason M.; Attie, Alan D.; Fraser, Hunter B.; Schadt, Eric E.

Global survey of escape from X inactivation by RNA-sequencing in mouse

GENOME RESEARCH

IF5.5

2010-04-02

336

OAAI

Yang, Fan; Babak, Tomas; Shendure, Jay; Disteche, Christine M.

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300

RNA

IF5

2009-09-29

OAAI

Khanna, May; Van Bakel, Harm; Tang, Xinyi; Calarco, John A.; Babak, Tomas; Guo, Grace; Emili, Andrew; Greenblatt, Jack F.; Hughes, Timothy R.; Krogan, Nevan J.; Blencowe, Benjamin J.

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

NATURE METHODS

IF32.1

2009-08-09

157

PREAI

Armour, Christopher D.; Castle, John C.; Chen, Ronghua; Babak, Tomas; Loerch, Patrick; Jackson, Stuart; Shah, Jyoti K.; Dey, John; Rohl, Carol A.; Johnson, Jason M.; Raymond, Christopher K.

研究方向