Luyi Tian - Publications, H-index & Citations

Luyi Tian

Guangzhou Medical University

24H指数

79论文数

3.8K被引数

收录论文 22

发表时间

Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis 空间谱系示踪揭示了肿瘤生长和转移的动态空间架构

Nature Genetics

IF29

2026-09-02

PREAI

Matthew G. Jones; Dawei Sun; Kyung Hoi Joseph Min; William N. Colgan; Haoyu Wang; Tivadar Török; Juliano Ribeiro; Jessie Xue; Erik C. Cardoso; Yao Rong; Luyi Tian; Jackson A. Weir; Victor Z. Chen; Luke W. Koblan; Kathryn E. Yost; Nicolas Mathey-Andrews; Edridge D’Souza; Andrew J. C. Russell; Robert R. Stickels; Karol S. Balderrama; William M. Rideout; Min Dai; Giovanni Marrero; Vipin Kumar; Anjali Saqi; Benjamin Herzberg; Benjamin Izar; Howard Y. Chang; Joo-Hyeon Lee; Tyler Jacks; Fei Chen; Jonathan S. Weissman; Nir Yosef; Dian Yang

Graph-based contrastive learning enables unified integration and niche transfer across single-cell and spatial multi-omics 图表示对比学习实现单细胞和多组学空间数据的统一整合与特化迁移

Briefings in Bioinformatics

IF7.7

2026-08-18

OAAI

Weige Zhou; Xueying Fan; Lanxiang Li; Jianrong Zheng; Xiaodong Liu; Wenfei Jin; Luyi Tian

Unveiling gene modules at Atlas scale through hierarchical clustering of single-cell data 通过单细胞数据的层次聚类揭示大规模基因模块

Nature Communications

IF15.7

2026-05-26

OAAI

Feng Tang; Zhongmin Zhang; Weige Zhou; Guangpeng Li; Yang Xu; Luyi Tian

A three-dimensional spatial transcriptome atlas reconstructs early organogenesis in primate Carnegie stages 9 and 10 embryos 三维空间转录组图谱重建灵长类卡内基第9和第10期胚胎的早期器官发生

Nature Cell Biology

IF19.1

2026-05-07

PREAI

Jia Ping Tan; Yifang Liu; Yuting Fu; Langchao Liang; Yan Wu; Tiantian Guo; Shikai Jia; Yujia Jiang; Tingli Yuan; Jie Li; Yixin Li; Zhi Huang; Shenglong Li; Jie Li; Xixi Yan; Zizhuo Liao; Xiaojing Liu; Bowen Hu; Shujie Fu; Shijie Hao; Luyi Tian; Zhen Liu; Leqian Yu; Longqi Liu; Xiaodong Liu

stPipe: a flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data stPipe: 一种灵活且高效的R/Bioconductor流程，用于预处理基于测序的空间转录组学数据

NAR GENOMICS AND BIOINFORMATICS

IF2.8

2025-12-01

OAAI

Xu, Yang; Sargeant, Callum J.; You, Yue; You, Yupei; Su, Shian; Wang, Changqing; Tian, Luyi; Chen, Yunshun; Ritchie, Matthew E.

Single-cell Rapid Capture Hybridization sequencing reliably detects isoform usage and coding mutations in targeted genes 单细胞快速捕获杂交测序可靠地检测靶向基因的异构体使用和编码突变

GENOME RESEARCH

IF5.5

2025-01-10

PREAI

Peng, Hongke; Jabbari, Jafar S.; Tian, Luyi; Wang, Changqing; You, Yupei; Chua, Chong Chyn; Anstee, Natasha S.; Wei, Andrew H.; Davidson, Nadia M.; Roberts, Andrew W.; Huang, David C. S.; Ritchie, Matthew E.; Thijssen, Rachel

Viral capsid-mediated efficient cell labeling of micron-sized magnetic particles for highly sensitive long-term in vivo tumor cells MRI tracking

CHEMICAL ENGINEERING JOURNAL

IF13.2

2024-10-01

PREAI

Feng, Xiayi; Gao, Ding; Zhou, Juan; Gui, Zhu; Cai, Aoling; Wang, Jie; Dai, Ji; Jing, Yipeng; Qian, Junchao; Cui, Zongqiang; Li, Lanxiang; You, Yue; Tian, Luyi; Zhang, Xian-En; Men, Dong

Systematic comparison of sequencing-based spatial transcriptomic methods 基于测序的空间转录组方法的系统比较

NATURE METHODS

IF32.1

2024-07-04

OAAI

You, Yue; Fu, Yuting; Li, Lanxiang; Zhang, Zhongmin; Jia, Shikai; Lu, Shihong; Ren, Wenle; Liu, Yifang; Xu, Yang; Liu, Xiaojing; Jiang, Fuqing; Peng, Guangdun; Sampath Kumar, Abhishek; Ritchie, Matthew E.; Liu, Xiaodong; Tian, Luyi

Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

NATURE METHODS

IF32.1

2023-10-02

OAAI

Dong, Xueyi; Du, Mei R. M.; Gouil, Quentin; Tian, Luyi; Jabbari, Jafar S.; Bowden, Rory; Baldoni, Pedro L.; Chen, Yunshun; Smyth, Gordon K.; Amarasinghe, Shanika L.; Law, Charity W.; Ritchie, Matthew E.

A posterior probability based Bayesian method for single-cell RNA-seq data imputation 基于后验概率的贝叶斯单细胞rna-seq数据插补方法

METHODS

IF4.3

2023-08-01

PREAI

Chen, Siqi; Zheng, Ruiqing; Tian, Luyi; Wu, Fang-Xiang; Li, Min

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

NATURE GENETICS

IF31.8

2023-07-06

OAAI

Kumar, Abhishek Sampath; Tian, Luyi; Bolondi, Adriano; Hernandez, Amelia Aragones; Stickels, Robert; Kretzmer, Helene; Murray, Evan; Wittler, Lars; Walther, Maria; Barakat, Gabriel; Haut, Leah; Elkabetz, Yechiel; Macosko, Evan Z.; Guignard, Leo; Chen, Fei; Meissner, Alexander

The expanding vistas of spatial transcriptomics 空间转录组学的扩展前景

NATURE BIOTECHNOLOGY

IF41.7

2022-10-03

139

PREAI

Tian, Luyi; Chen, Fei; Macosko, Evan Z.

Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

GENOME BIOLOGY

IF9.4

2021-12-14

OAAI

You, Yue; Tian, Luyi; Su, Shian; Dong, Xueyi; Jabbari, Jafar S.; Hickey, Peter F.; Ritchie, Matthew E.

Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing

GENOME BIOLOGY

IF9.4

2021-11-11

OAAI

Tian, Luyi; Jabbari, Jafar S.; Thijssen, Rachel; Gouil, Quentin; Amarasinghe, Shanika L.; Voogd, Oliver; Kariyawasam, Hasaru; Du, Mei R. M.; Schuster, Jakob; Wang, Changqing; Su, Shian; Dong, Xueyi; Law, Charity W.; Lucattini, Alexis; Prawer, Yair David Joseph; Collar-Fernandez, Coralina; Chung, Jin D.; Naim, Timur; Chan, Audrey; Ly, Chi Hai; Lynch, Gordon S.; Ryall, James G.; Anttila, Casey J. A.; Peng, Hongke; Anderson, Mary Ann; Flensburg, Christoffer; Majewski, Ian; Roberts, Andrew W.; Huang, David C. S.; Clark, Michael B.; Ritchie, Matthew E.

Modulation of Vagal Sensory Neurons via High Mobility Group Box-1 and Receptor for Advanced Glycation End Products: Implications for Respiratory Viral Infections

FRONTIERS IN PHYSIOLOGY

IF3.4

2021-09-21

OAAI

Mazzone, Stuart B.; Yang, Seung-Kwon; Keller, Jennifer A.; Simanauskaite, Juste; Arikkatt, Jaisy; Fogarty, Matthew J.; Moe, Aung Aung Kywe; Chen, Chen; Trewella, Matthew W.; Tian, Luyi; Ritchie, Matthew E.; Chua, Brendan Y.; Phipps, Simon; Short, Kirsty R.; McGovern, Alice E.

Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development

IMMUNITY

IF26.3

2021-06-01

OAAI

Tian, Luyi; Tomei, Sara; Schreuder, Jaring; Weber, Tom S.; Amann-Zalcenstein, Daniela; Lin, Dawn S.; Tran, Jessica; Audiger, Cindy; Chu, Mathew; Jarratt, Andrew; Willson, Tracy; Hilton, Adrienne; Pang, Ee Shan; Patton, Timothy; Kelly, Madison; Su, Shian; Gouil, Quentin; Diakumis, Peter; Bahlo, Melanie; Sargeant, Toby; Kats, Lev M.; Hodgkin, Philip D.; O'Keeffe, Meredith; Ng, Ashley P.; Ritchie, Matthew E.; Naik, Shalin H.

The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools

genomics proteomics bioinformatics

IF2.8

2021-04-26

OAAI

Dong, Xueyi; Tian, Luyi; Gouil, Quentin; Kariyawasam, Hasaru; Su, Shian; De Paoli-Iseppi, Ricardo; Prawer, Yair David Joseph; Clark, Michael B.; Breslin, Kelsey; Iminitoff, Megan; Blewitt, Marnie E.; Law, Charity W.; Ritchie, Matthew E.

Single-cell analyses reveal the clonal and molecular aetiology of Flt3L-induced emergency dendritic cell development

NATURE CELL BIOLOGY

IF19.1

2021-03-01

PREAI

Lin, Dawn S.; Tian, Luyi; Tomei, Sara; Amann-Zalcenstein, Daniela; Baldwin, Tracey M.; Weber, Tom S.; Schreuder, Jaring; Stonehouse, Olivia J.; Rautela, Jai; Huntington, Nicholas D.; Taoudi, Samir; Ritchie, Matthew E.; Hodgkin, Philip D.; Ng, Ashley P.; Nutt, Stephen L.; Naik, Shalin H.

A new lymphoid-primed progenitor marked byDach1downregulation identified with single cell multi-omics

NATURE IMMUNOLOGY

IF27.6

2020-10-19

PREAI

Amann-Zalcenstein, Daniela; Tian, Luyi; Schreuder, Jaring; Tomei, Sara; Lin, Dawn S.; Fairfax, Kirsten A.; Bolden, Jessica E.; McKenzie, Mark D.; Jarratt, Andrew; Hilton, Adrienne; Jackson, Jacob T.; Di Rago, Ladina; McCormack, Matthew P.; de Graaf, Carolyn A.; Stonehouse, Olivia; Taoudi, Samir; Alexander, Warren S.; Nutt, Stephen L.; Ritchie, Matthew E.; Ng, Ashley P.; Naik, Shalin H.

Introduction and validation of a new semi-automated method to determine sympathetic fiber density in target tissues

BRAIN BEHAVIOR AND IMMUNITY

IF7.6

2019-10-01

PREAI

Bleck, D.; Ma, L.; Brinks, R.; Schneider, M.; Tian, L.; Pongratz, G.

研究方向