Dmitriy M. Chudakov - Publications, H-index & Citations

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Dmitriy M. Chudakov

pirogov russian national research medical university

71H-index

287Paper Count

2.3WCitation Count

Published Papers 110

Publication Date

Splicing-aware scRNA-Seq resolution reveals execution-ready programs in effector Tregs

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-11-01

PREAI

Lukyanov, Daniil K.; Egorov, Evgeniy S.; Kriukova, Valeriia V.; Syrko, Denis; Kotliar, Victor V.; Ladell, Kristin; Price, David A.; Franke, Andre; Chudakov, Dmitry M.

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Modern Laboratory Test-Systems as Platforms for Validation of Clinically Promising T-Cell Receptors

RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY

IF0

2025-10-01

OAAI

Mungalov, R. V.; Vand, N. S.; Chudakov, D. M.; Bryushkova, E. A.

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EBV Infection Alters NK Cell Phenotype Distinctly From hCMV

Journal of Medical Virology

IF4.6

2025-09-26

PREAI

Maria O. Ustiuzhanina; Julia D. Vavilova; Maria A. Salnikova; Aglaya A. Chertkova; Nadezhda A. Alekseeva; Anna A. Boyko; Anastasia I. Palamarchuk; Maria A. Streltsova; Dmitriy M. Chudakov; Elena I. Kovalenko

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Comprehensive analysis of αβT-cell receptor repertoires reveals signatures of thymic selection

Frontiers in Immunology

IF5.9

2025-09-19

OAAI

Daniil V. Luppov; Elizaveta K. Vlasova; Dmitry M. Chudakov; Mikhail Shugay

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FCRLs and atypical transcriptional pattern in tumor infiltrating B cells from lung and renal cancer

Frontiers in Immunology

IF5.9

2025-09-08

OAAI

Ekaterina A. Bryushkova‡; Evgenii V. Shchoka†‡; Daniil K. Lukyanov‡; Marina B. Gikalo; Natalya Mushenkova; Konstantin K. Laktionov; Alexey M. Kazakov; Oybek A. Khalmurzaev; Vsevolod B. Matveev; Dmitriy M. Chudakov; Ekaterina O. Serebrovskaya

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Neighborhood enrichment for the identification of antigen-specific T-cell receptors

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-09-01

OAAI

Lupyr, Kseniia R.; Shelyakin, Pavel, V; Sobyanin, Konstantin A.; Martynov, Ruslan A.; Popov, Vladimir S.; Rabdano, Sevastyan O.; Nikitina, Olga S.; Yanushevich, Yurii G.; Kofiadi, Ilya A.; Staroverov, Dmitry B.; Shugay, Mikhail; Chudakov, Dmitriy M.; Britanova, Olga, V

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Repertoire-based mapping and time-tracking of T helper cell subsets in scRNA-Seq

FRONTIERS IN IMMUNOLOGY

IF5.9

2025-04-04

OAAI

Lukyanov, Daniil K.; Kriukova, Valeriia V.; Ladell, Kristin; Shagina, Irina A.; Staroverov, Dmitry B.; Minasian, Bella E.; Fedosova, Anna S.; Shelyakin, Pavel; Suchalko, Oleg N.; Komkov, Alexander Y.; Blagodatskikh, Konstantin A.; Miners, Kelly L.; Britanova, Olga V.; Franke, Andre; Price, David A.; Chudakov, Dmitry M.

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The Antigen-Specific Response of NK Cells to SARS-CoV-2 Correlates With KIR2DS4 Expression

JOURNAL OF MEDICAL VIROLOGY

IF4.6

2024-11-14

PREAI

Ustiuzhanina, M. O.; Boyko, A. A.; Vavilova, J. D.; Siniavin, A. E.; Streltsova, M. A.; Astrakhantseva, I. V.; Drutskaya, M. S.; Chudakov, D. M.; Kovalenko, E. I.

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Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen

NATURE COMPUTATIONAL SCIENCE

IF18.3

2024-07-10

PREAI

Karnaukhov, Vadim K.; Shcherbinin, Dmitrii S.; Chugunov, Anton O.; Chudakov, Dmitriy M.; Efremov, Roman G.; Zvyagin, Ivan V.; Shugay, Mikhail

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Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism

ELIFE

IF0

2024-04-09

OAAI

Nakonechnaya, Tatyana O.; Moltedo, Bruno; Putintseva, Ekaterina, V; Leyn, Sofya; Bolotin, Dmitry A.; Britanova, Olga, V; Shugay, Mikhail; Chudakov, Dmitriy M.

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Clonal structure and the specificity of vaccine-induced T cell response to SARS-CoV-2 Spike protein

FRONTIERS IN IMMUNOLOGY

IF5.9

2024-04-02

OAAI

Sheetikov, Saveliy A.; Khmelevskaya, Alexandra A.; Zornikova, Ksenia V.; Zvyagin, Ivan V.; Shomuradova, Alina S.; Serdyuk, Yana V.; Shakirova, Naina T.; Peshkova, Iuliia O.; Titov, Aleksei; Romaniuk, Dmitrii S.; Shagina, Irina A.; Chudakov, Dmitry M.; Kiryukhin, Dmitry O.; Shcherbakova, Olga V.; Khamaganova, Ekaterina G.; Dzutseva, Vitalina; Afanasiev, Andrei; Bogolyubova, Apollinariya V.; Efimov, Grigory A.

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Autologous T-Cell-Free Antigen Presentation System Unveils hCMV-Specific NK Cell Response

CELLS

IF5.2

2024-03-17

OAAI

Ustiuzhanina, Maria O.; Streltsova, Maria A.; Timofeev, Nikita D.; Kryukov, Maxim A.; Chudakov, Dmitriy M.; Kovalenko, Elena I.

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B cell clonality in cancer

SEMINARS IN IMMUNOLOGY

IF7.8

2024-03-01

PREAI

Bryushkova, E. A.; Mushenkova, N. V.; Turchaninova, M. A.; Lukyanov, D. K.; Chudakov, D. M.; Serebrovskaya, E. O.

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Toolkit for mapping the clonal landscape of tumor-infiltrating B cells

SEMINARS IN IMMUNOLOGY

IF7.8

2024-03-01

PREAI

Serebrovskaya, E. O.; Bryushkova, E. A.; Lukyanov, D. K.; Mushenkova, N. V.; Chudakov, D. M.; Turchaninova, M. A.

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Targeted depletion of TRBV9+ T cells as immunotherapy in a patient with ankylosing spondylitis

NATURE MEDICINE

IF50

2023-10-23

OAAI

Britanova, Olga V.; Lupyr, Kseniia R.; Staroverov, Dmitry B.; Shagina, Irina A.; Aleksandrov, Alexey A.; Ustyugov, Yakov Y.; Somov, Dmitry V.; Klimenko, Alesia; Shostak, Nadejda A.; Zvyagin, Ivan V.; Stepanov, Alexey V.; Merzlyak, Ekaterina M.; Davydov, Alexey N.; Izraelson, Mark; Egorov, Evgeniy S.; Bogdanova, Ekaterina A.; Vladimirova, Anna K.; Iakovlev, Pavel A.; Fedorenko, Denis A.; Ivanov, Roman A.; Skvortsova, Veronika I.; Lukyanov, Sergey; Chudakov, Dmitry M.

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Novel bimodal TRBD1-TRBD2 rearrangements with dual or absent D-region contribute to TRB V-(D)-J combinatorial diversity

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-09-07

OAAI

Smirnova, Anastasia O.; Miroshnichenkova, Anna M.; Belyaeva, Laima D.; Kelmanson, Ilya V.; Lebedev, Yuri B.; Mamedov, Ilgar Z.; Chudakov, Dmitriy M.; Komkov, Alexander Y.

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Large-scale template-based structural modeling of T-cell receptors with known antigen specificity reveals complementarity features

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-08-15

OAAI

Shcherbinin, Dmitrii S.; Karnaukhov, Vadim K.; Zvyagin, Ivan V.; Chudakov, Dmitriy M.; Shugay, Mikhail

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Defective peripheral B cell selection in common variable immune deficiency patients with autoimmune manifestations

CELL REPORTS

IF6.9

2023-05-01

OAAI

Friman, Vanda; Quinti, Isabella; Davydov, Alexey N.; Shugay, Mikhail; Farroni, Chiara; Engstrom, Erik; Akaber, Shirin Pour; Barresi, Sabina; Mohamed, Ahmed; Pulvirenti, Federica; Milito, Cinzia; Granata, Guido; Giorda, Ezio; Ahlstrom, Sara; Karlsson, Johanna; Marasco, Emiliano; Marcellini, Valentina; Bocci, Chiara; Cascioli, Simona; Scarsella, Marco; Phad, Ganesh; Tilevik, Andreas; Tartaglia, Marco; Bemark, Mats; Chudakov, Dmitriy M.; Carsetti, Rita; Grimsholm, Ola

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The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling

ELIFE

IF0

2023-01-24

OAAI

Smirnova, Anastasia O.; Miroshnichenkova, Anna M.; Olshanskaya, Yulia, V; Maschan, Michael A.; Lebedev, Yuri B.; Chudakov, Dmitriy M.; Mamedov, Ilgar Z.; Komkov, Alexander

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SARS-CoV-2 escape from cytotoxic T cells during long-term COVID-19

NATURE COMMUNICATIONS

IF15.7

2023-01-10

OAAI

Stanevich, Oksana, V; Alekseeva, Evgeniia, I; Sergeeva, Maria; Fadeev, Artem, V; Komissarova, Kseniya S.; Ivanova, Anna A.; Simakova, Tamara S.; Vasilyev, Kirill A.; Shurygina, Anna-Polina; Stukova, Marina A.; Safina, Ksenia R.; Nabieva, Elena R.; Garushyants, Sofya K.; Klink, Galya, V; Bakin, Evgeny A.; Zabutova, Jullia, V; Kholodnaia, Anastasia N.; Lukina, Olga, V; Skorokhod, Irina A.; Ryabchikova, Viktoria V.; Medvedeva, Nadezhda, V; Lioznov, Dmitry A.; Danilenko, Daria M.; Chudakov, Dmitriy M.; Komissarov, Andrey B.; Bazykin, Georgii A.

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Research Directions