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D

Dmitriy M. Chudakov

russian national medical state university

71H-index
291Paper Count
2.3WCitation Count
Published Papers 113
Publication Date
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VDJdb in 2026: boosting T-cell receptor recognition evidence using paratope embeddings and AI-based structure prediction
errNucleic Acids Research
IF13.1
err2026-09-23
err0
errOAAI
errDaniil V Luppov; Anna E Koneva; Dmitry V Bagaev; Anastasiia V Alexandrova; Elizaveta K Vlasova; Dmitry M Chudakov; Chihiro Motozono; Andrew K Sewell; Mikhail Shugay; null
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T Cell Thoughts
errImmunological Reviews
IF8.3
err2026-09-09
err0
PREAI
errDmitry M. Chudakov
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errSave
Towards high-quality large-scale T cell receptor antigen specificity data: challenges and promises
errNature Methods
IF32.1
err2026-09-03
err0
PREAI
errMikhail Shugay; Daniil V. Luppov; Elizaveta K. Vlasova; Dmitry M. Chudakov
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Splicing-aware scRNA-Seq resolution reveals execution-ready programs in effector Tregs
errPLOS COMPUTATIONAL BIOLOGY
IF3.6
err2025-11-01
err0
PREAI
errLukyanov, Daniil K.; Egorov, Evgeniy S.; Kriukova, Valeriia V.; Syrko, Denis; Kotliar, Victor V.; Ladell, Kristin; Price, David A.; Franke, Andre; Chudakov, Dmitry M.
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Modern Laboratory Test-Systems as Platforms for Validation of Clinically Promising T-Cell Receptors
errRUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY
IF0
err2025-10-01
err0
errOAAI
errMungalov, R. V.; Vand, N. S.; Chudakov, D. M.; Bryushkova, E. A.
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errSave
EBV Infection Alters NK Cell Phenotype Distinctly From hCMV
errJournal of Medical Virology
IF4.6
err2025-09-26
err0
PREAI
errMaria O. Ustiuzhanina; Julia D. Vavilova; Maria A. Salnikova; Aglaya A. Chertkova; Nadezhda A. Alekseeva; Anna A. Boyko; Anastasia I. Palamarchuk; Maria A. Streltsova; Dmitriy M. Chudakov; Elena I. Kovalenko
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Comprehensive analysis of αβT-cell receptor repertoires reveals signatures of thymic selection
errFrontiers in Immunology
IF5.9
err2025-09-19
err0
errOAAI
errDaniil V. Luppov; Elizaveta K. Vlasova; Dmitry M. Chudakov; Mikhail Shugay
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FCRLs and atypical transcriptional pattern in tumor infiltrating B cells from lung and renal cancer
errFrontiers in Immunology
IF5.9
err2025-09-08
err0
errOAAI
errEkaterina A. Bryushkova‡; Evgenii V. Shchoka†‡; Daniil K. Lukyanov‡; Marina B. Gikalo; Natalya Mushenkova; Konstantin K. Laktionov; Alexey M. Kazakov; Oybek A. Khalmurzaev; Vsevolod B. Matveev; Dmitriy M. Chudakov; Ekaterina O. Serebrovskaya
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Neighborhood enrichment for the identification of antigen-specific T-cell receptors
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-09-01
err0
errOAAI
errLupyr, Kseniia R.; Shelyakin, Pavel, V; Sobyanin, Konstantin A.; Martynov, Ruslan A.; Popov, Vladimir S.; Rabdano, Sevastyan O.; Nikitina, Olga S.; Yanushevich, Yurii G.; Kofiadi, Ilya A.; Staroverov, Dmitry B.; Shugay, Mikhail; Chudakov, Dmitriy M.; Britanova, Olga, V
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Repertoire-based mapping and time-tracking of T helper cell subsets in scRNA-Seq
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2025-04-04
err0
errOAAI
errLukyanov, Daniil K.; Kriukova, Valeriia V.; Ladell, Kristin; Shagina, Irina A.; Staroverov, Dmitry B.; Minasian, Bella E.; Fedosova, Anna S.; Shelyakin, Pavel; Suchalko, Oleg N.; Komkov, Alexander Y.; Blagodatskikh, Konstantin A.; Miners, Kelly L.; Britanova, Olga V.; Franke, Andre; Price, David A.; Chudakov, Dmitry M.
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The Antigen-Specific Response of NK Cells to SARS-CoV-2 Correlates With KIR2DS4 Expression
errJOURNAL OF MEDICAL VIROLOGY
IF4.6
err2024-11-14
err0
PREAI
errUstiuzhanina, M. O.; Boyko, A. A.; Vavilova, J. D.; Siniavin, A. E.; Streltsova, M. A.; Astrakhantseva, I. V.; Drutskaya, M. S.; Chudakov, D. M.; Kovalenko, E. I.
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Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2024-07-10
err4
PREAI
errKarnaukhov, Vadim K.; Shcherbinin, Dmitrii S.; Chugunov, Anton O.; Chudakov, Dmitriy M.; Efremov, Roman G.; Zvyagin, Ivan V.; Shugay, Mikhail
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Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism
errELIFE
IF0
err2024-04-09
err1
errOAAI
errNakonechnaya, Tatyana O.; Moltedo, Bruno; Putintseva, Ekaterina, V; Leyn, Sofya; Bolotin, Dmitry A.; Britanova, Olga, V; Shugay, Mikhail; Chudakov, Dmitriy M.
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errSave
Clonal structure and the specificity of vaccine-induced T cell response to SARS-CoV-2 Spike protein
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-04-02
err2
errOAAI
errSheetikov, Saveliy A.; Khmelevskaya, Alexandra A.; Zornikova, Ksenia V.; Zvyagin, Ivan V.; Shomuradova, Alina S.; Serdyuk, Yana V.; Shakirova, Naina T.; Peshkova, Iuliia O.; Titov, Aleksei; Romaniuk, Dmitrii S.; Shagina, Irina A.; Chudakov, Dmitry M.; Kiryukhin, Dmitry O.; Shcherbakova, Olga V.; Khamaganova, Ekaterina G.; Dzutseva, Vitalina; Afanasiev, Andrei; Bogolyubova, Apollinariya V.; Efimov, Grigory A.
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errSave
Autologous T-Cell-Free Antigen Presentation System Unveils hCMV-Specific NK Cell Response
errCELLS
IF5.2
err2024-03-17
err2
errOAAI
errUstiuzhanina, Maria O.; Streltsova, Maria A.; Timofeev, Nikita D.; Kryukov, Maxim A.; Chudakov, Dmitriy M.; Kovalenko, Elena I.
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B cell clonality in cancer
errSEMINARS IN IMMUNOLOGY
IF7.8
err2024-03-01
err0
PREAI
errBryushkova, E. A.; Mushenkova, N. V.; Turchaninova, M. A.; Lukyanov, D. K.; Chudakov, D. M.; Serebrovskaya, E. O.
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Toolkit for mapping the clonal landscape of tumor-infiltrating B cells
errSEMINARS IN IMMUNOLOGY
IF7.8
err2024-03-01
err0
PREAI
errSerebrovskaya, E. O.; Bryushkova, E. A.; Lukyanov, D. K.; Mushenkova, N. V.; Chudakov, D. M.; Turchaninova, M. A.
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Targeted depletion of TRBV9+ T cells as immunotherapy in a patient with ankylosing spondylitis
errNATURE MEDICINE
IF50
err2023-10-23
err17
errOAAI
errBritanova, Olga V.; Lupyr, Kseniia R.; Staroverov, Dmitry B.; Shagina, Irina A.; Aleksandrov, Alexey A.; Ustyugov, Yakov Y.; Somov, Dmitry V.; Klimenko, Alesia; Shostak, Nadejda A.; Zvyagin, Ivan V.; Stepanov, Alexey V.; Merzlyak, Ekaterina M.; Davydov, Alexey N.; Izraelson, Mark; Egorov, Evgeniy S.; Bogdanova, Ekaterina A.; Vladimirova, Anna K.; Iakovlev, Pavel A.; Fedorenko, Denis A.; Ivanov, Roman A.; Skvortsova, Veronika I.; Lukyanov, Sergey; Chudakov, Dmitry M.
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Novel bimodal TRBD1-TRBD2 rearrangements with dual or absent D-region contribute to TRB V-(D)-J combinatorial diversity
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2023-09-07
err0
errOAAI
errSmirnova, Anastasia O.; Miroshnichenkova, Anna M.; Belyaeva, Laima D.; Kelmanson, Ilya V.; Lebedev, Yuri B.; Mamedov, Ilgar Z.; Chudakov, Dmitriy M.; Komkov, Alexander Y.
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Large-scale template-based structural modeling of T-cell receptors with known antigen specificity reveals complementarity features
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2023-08-15
err2
errOAAI
errShcherbinin, Dmitrii S.; Karnaukhov, Vadim K.; Zvyagin, Ivan V.; Chudakov, Dmitriy M.; Shugay, Mikhail
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Research Directions

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Co-authors
Cooperation Journals
A
André Franke
H-index: 152 · Papers: 1.2K
A
Allan Bradley
H-index: 137 · Papers: 461
D
Daniel C. Douek
H-index: 137 · Papers: 597
A
Alexander Y. Rudensky
H-index: 127 · Papers: 345
F
Franco Locatelli
H-index: 125 · Papers: 2.2K
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