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Optimized model architectures for deep learning on genomic data (vol 7, 516, 2024) Guenduez, Hueseyin Anil; Mreches, Rene; Moosbauer, Julia; Robertson, Gary; To, Xiao-Yin; Franzosa, Eric A.; Huttenhower, Curtis; Rezaei, Mina; McHardy, Alice C.; Bischl, Bernd; Muench, Philipp C.; Binder, Martin Share Save
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Optimized model architectures for deep learning on genomic data Guenduez, Hueseyin Anil; Mreches, Rene; Moosbauer, Julia; Robertson, Gary; To, Xiao-Yin; Franzosa, Eric A.; Huttenhower, Curtis; Rezaei, Mina; Mchardy, Alice C.; Bischl, Bernd; Muench, Philipp C.; Binder, Martin Share Save
Cellular Importin- a 3 Expression Dynamics in the Lung Regulate Antiviral Response Pathways against Influenza A Virus Infection (vol 31, 107549, 2020) Thiele, Swantje; Stanelle-Bertram, Stephanie; Beck, Sebastian; Kouassi, Nancy Mounogou; Zickler, Martin; Muller, Martin; Tuku, Berfin; Resa-Infante, Patricia; van Riel, Debby; Alawi, Malik; Gunther, Thomas; Rother, Franziska; Hugel, Stefanie; Reimering, Susanne; Mchardy, Alice; Grundhoff, Adam; Brune, Wolfram; Osterhaus, Albert; Bader, Michael; Hartmann, Enno; Gabriel, Gulsah Share Save
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CYP19A1 mediates severe SARS-CoV-2 disease outcome in males Stanelle-Bertram, Stephanie; Beck, Sebastian; Mounogou, Nancy Kouassi; Schaumburg, Berfin; Stoll, Fabian; Al Jawazneh, Amirah; Schmal, Zoe; Bai, Tian; Zickler, Martin; Beythien, Georg; Becker, Kathrin; de la Roi, Madeleine; Heinrich, Fabian; Schulz, Claudia; Sauter, Martina; Krasemann, Susanne; Lange, Philine; Heinemann, Axel; van Riel, Debby; Leijten, Lonneke; Bauer, Lisa; van den Bosch, Thierry P. P.; Lopuhaa, Boaz; Busche, Tobias; Wibberg, Daniel; Schaudien, Dirk; Goldmann, Torsten; Luettohann, Anna; Ruschinski, Jenny; Jania, Hanna; Mueller, Zacharias; dos Reis, Vinicius Pinho; Krupp-Buzimkic, Vanessa; Wolff, Martin; Fallerini, Chiara; Baldassarri, Margherita; Furini, Simone; Norwood, Katrina; Kaeufer, Christopher; Schuetzenmeister, Nina; von Koeckritz-Blickwede, Maren; Schroeder, Maria; Jarczak, Dominik; Nierhaus, Axel; Welte, Tobias; Kluge, Stefan; Mchardy, Alice C.; Sommer, Frank; Kalinowski, Joern; Krauss-Etschmann, Susanne; Richter, Franziska; von der Thuesen, Jan; Baumgaertner, Wolfgang; Klingel, Karin; Ondruschka, Benjamin; Renieri, Alessandra; Gabriel, Guelsah Share Save
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Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge Poussin, Carine; Khachatryan, Lusine; Sierro, Nicolas; Narsapuram, Vijay Kumar; Meyer, Fernando; Kaikala, Vinay; Chawla, Vandna; Muppirala, Usha; Kumar, Sunil; Belcastro, Vincenzo; Battey, James N. D.; Scotti, Elena; Boue, Stephanie; McHardy, Alice C.; Peitsch, Manuel C.; Ivanov, Nikolai, V; Hoeng, Julia Share Save
Metadata harmonization-Standards are the key for a better usage of omics data for integrative microbiome analysis Cernava, Tomislav; Rybakova, Daria; Buscot, Francois; Clavel, Thomas; McHardy, Alice Carolyn; Meyer, Fernando; Meyer, Folker; Overmann, Jorg; Stecher, Barbel; Sessitsch, Angela; Schloter, Michael; Berg, Gabriele Share Save
Peptide microarrays coupled to machine learning reveal individual epitopes from human antibody responses with neutralizing capabilities against SARS-CoV-2 Hotop, Sven-Kevin; Reimering, Susanne; Shekhar, Aditya; Asgari, Ehsaneddin; Beutling, Ulrike; Dahlke, Christine; Fathi, Anahita; Khan, Fawad; Luetgehetmann, Marc; Ballmann, Rico; Gerstner, Andreas; Tegge, Werner; Cicin-Sain, Luka; Bilitewski, Ursula; McHardy, Alice C.; Broenstrup, Mark Share Save
Critical Assessment of Metagenome Interpretation: the second round of challenges Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J.; Brown, C. Titus; Buchmann, Jan; Buluc, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T. L. C.; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E.; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A.; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jorgensen, Tue Sparholt; Kieser, Silas D.; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R.; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R.; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C.; Porter, Jacob S.; Rasmussen, Simon; Rees, Evan R.; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L.; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sorensen, Soren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Haeussler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn Share Save
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Reporting guidelines for human microbiome research: the STORMS checklist Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; Clarke, Gerard; Carmen Collado, Maria; Cotter, Paul D.; Cryan, John F.; Demmer, Ryan T.; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S.; Fettweis, Jennifer; Finn, Robert D.; Fodor, Anthony A.; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P.; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S.; Langille, Morgan; Lindsay, Brianna; McGovern, Dermot; McHardy, Alice C.; McWeeney, Shannon; Mueller, Noel T.; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R.; Ruhlemann, Malte; Sartor, R. Balfour; Schloss, Patrick D.; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L.; Srinivasan, Sujatha; Thingholm, Louise B.; Turnbaugh, Peter J.; Upadhyay, Vaibhav; Walls, Ramona L.; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E.; Mercer, Tim R.; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B.; Jones, Heidi E.; Waldron, Levi Share Save
Haploflow: strain-resolved de novo assembly of viral genomes Fritz, Adrian; Bremges, Andreas; Deng, Zhi-Luo; Lesker, Till Robin; Gotting, Jasper; Ganzenmueller, Tina; Sczyrba, Alexander; Dilthey, Alexander; Klawonn, Frank; McHardy, Alice Carolyn Share Save
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